+Marker Data: est_yfr01d02

Crop eggplant
Population AL2010
Linkage Group E_02
Marker Type SNP
Map Position 69.9
Annotation
Source Name YFR01D02
Source Type 16k_SmUnigene
Source Sequence
Developer NIVTS
Document

Typing_Method Tm-Shift
Marker_Class EST-misc
STS_primer_fwd CTTCTGGATGTCCTTTCAAGTCGG
STS_primer_rev CCAAGAGATGAACAAATCAAGGGG
amplicon_seq TCTTCTGGATGTCCTTTCAAGTCGGCAAAGCCCGCAAACAGTACGGTTTTCTCTAATTCTCTGCTTATTTCTTGATTTTTCCTAAGTTTACACAACCCGTTTTGCAAATTTTGTGATTTTGAAGCTAAAGATTGGTTTTTTCTAAGATTTTGCCTAACCCCTTTTGTGATTAGAAGCTGAAGATTTGTTTTTTGTAAGATTTATCCCAACCCCTTTTGTGATTAAAAGCTAGAGATACTGATTAATGATGGAAATCTTAACAGGTATAAGGTTCCTTATCCAACAATGTATGCCACTGAAGCTGAAAATAAGAATGCTAATTCCTTTAACTGTGTTCAGGTATGCTGTCTTCTCTTTAGAGAAAGAAGTAAAATTAGTTGATGACACACTTCATTTTTTGGTAATTTATAGTTTAGGAAATGATATGGACTTGTTATGTTGTTGTGTTGATCGCAGAGAGGTCATCAGAATTCATTAGAAATGATGCCACTGTTTTTCACGCTGATGATTGTTGGAGGAATTAAGCACCCCTTGATTTGTTCATCTCTTGGA
SNP_position 225
allele_1 A
allele_2 G
ASP_primer_S GCGGGCATTTATCCCAACCCCTTTTGTGATTAA
ASP_primer_L GCGGGCAGGGCGGCATTTATCCCAACCCCTTTTGTGATTAG
Common_primer ACCTTATACCTGTTAAGATTTCCATCA
enzyme Stoffel frag.
dye EvaGreen

Line allele-1 allele-2
AE-P03 A A
LS1934 G G
WCGR112-8 A A

Population Linkage Group Position
AL2010 E_02 69.9
ALF2 AL02 73.6
LW2010 E_02 50.2
LWA2010 LWA_02 53.137
LWAE2012 E_02 53.169
LWF2_2022 E_02 80.6
NAF2 NA02.2 3.6

DB Program Definition E-Value

EST Name Species Strain