+Marker Data: est_sht03o11

Crop eggplant
Population AL2010
Linkage Group E_12
Marker Type SNP
Map Position 97.4
Annotation
Source Name SHT03O11
Source Type 16k_SmUnigene
Source Sequence
Developer NIVTS
Document

Typing_Method Tm-Shift
Marker_Class EST-misc
STS_primer_fwd
STS_primer_rev
amplicon_seq NNAGCCATTACCCAACGCCATGGTTTTGGTTACTCTGAAGGAGTTGTCTGGTGGTGCTCACAAGCTTCTTCCAGAAGGTGTGTGATAATTGTATTTGTTCTGTAAGTTCTTTGAATCAATTATCTTCTATAGGTTTGGTAATCAGGCTAGACCTGGAAACATCCTTGTAGGTACACGATTGGTTGTGTCTGTGCGTGGTGATGAATCACAAGGCGAGTTGGAGATCCTGAAGAGCTCTGATGTTACTGTGGTTCTTCATAATCTGCCATATACAGAGGAAAAAATTGGCAGGGTTCAAGCAGCCAGAAGGTATGTTGCATCTCGATTAAAAACATCACATTCGCTTACAGTAAATCAGTTGGCATAACCAAATATGATACGTTCCATTTGTATAAACTTTCTCGAAGGCAGACATTACGACAGAAAACTACTTAGCTGCTGCTTTTTTTCGACACTGTTAACTTGAGCATATCTGCTTTTGCAGGCTTTTTGAGTATCTTTCTGAGAATTCCTTGAACTTTCCAGTGATTCATCACATACAATTTCCCACCGACACCCACAGGTACGGCAAAAAAGACATGCTCACCTACAATCAGACATGTAGAGGTTTTTCTTGTGTAATTTAGCTTACGACAATTTCAACATGACAGGGATGACTTAGTGATTGGTGCCGGGACAAATGCCGGAGCCCTCTTGGTAGATGGGCTTGGAGATGGTGTTCTCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
SNP_position 248
allele_1 G
allele_2 A
ASP_primer_S GCGGGCTGTATATGGCAGATTATGAAGAACCAT
ASP_primer_L GCGGGCAGGGCGGCTGTATATGGCAGATTATGAAGAACAAC
Common_primer ACAAGGCGAGTTGGAGATCCTGAAGAG
enzyme Native Taq
dye SYBR Green I

Line allele-1 allele-2
AE-P03 A A
LS1934 G G

Population Linkage Group Position
AL2010 E_12 97.4
ALF2 AL12 108.8
LW2010 E_12 99.3
LWA2010 LWA_12 97.571
LWAE2012 E_12 94.606
LWF2_2022 E_12 110.3

DB Program Definition E-Value

EST Name Species Strain