+Marker Data: est_chx03d15

Crop eggplant
Population AL2010
Linkage Group E_10
Marker Type SNP
Map Position 10.5
Annotation
Source Name CHX03D15
Source Type 16k_SmUnigene
Source Sequence
Developer NIVTS
Document

Typing_Method Tm-Shift
Marker_Class EST-misc
STS_primer_fwd GTGCTTTGTGCTTCAGTCATGGAT
STS_primer_rev TTTTCACACGCGTTTTATCGGAGT
amplicon_seq ATTTGTTATGCAGCCTAGAAAGATGAAACAAGAACCAGCTTCAGTGAAACATCGATACATAGATGTACTAAGCATATGTTTGAACATGAATGTGCAAATAAGGGCAGCGGAGTGCACTAAGGTCCTGCTATGCTTGGGGTCCAGAGAAGGGCCAGACCAAAAAGGTCTTTTGTATGCAGCCTTAACCTACATGACTGTTTACACAGTTCGAACCAGTGACCTCCTGGTCACATGACTAGATTAGCGCATCATGTTGAGGGTCGTAAGGGGTATGAGTAAAGGAGTCCATTTAAATGGATATAGAGCTATATCAAATATCTCAATTGAGGAGACGAGACGGGGCTCGAAAGAGGACAATGGGGAATTTACCAGACAGGAAAAATAATACAACAACAACATACCCAGTGGAATCCCACAAACGGGGTCTGGGGAGCGTAAAATGTACGCAGACCTTACCACTACCTCTAGAGACAGAGAGGCTGTTTCCGGAAGTCCCTCGTCTCAAAATATATCATGCAGACGGGAAAAATAGATTTCTTCAAAATTTAGAGCAGTCATCATTTGGCTGGTATTCTGAATCACCTTAGCATAAGGGGGTAAATAGAGACATTACCATTTTCCTTTTCTTGATTTCCTTCAGTGCCAATTCCGCCAAATCTTTTGTAGGAACTATCTTTGCTTGTGGCATAATGTTAGACAAAAAGATCAAGATTTTCTGAAGCGGAACTGGTGGCGTCATGTCTTCTGCAATCTTAACAGAGCACCCGAGGGTCAGC
SNP_position 568
allele_1 G
allele_2 A
ASP_primer_S GCGGGCAAATTTAGAGCAGTCATCATTTGGCTA
ASP_primer_L GCGGGCAGGGCGGCAAATTTAGAGCAGTCATCATTTGGCTG
Common_primer TACCCCCTTATGCTAAGGTGATTCAGA
enzyme Stoffel frag.
dye EvaGreen

Line allele-1 allele-2
AE-P03 A A
LS1934 A A
WCGR112-8 G G

Population Linkage Group Position
AL2010 E_10 10.5
LW2010 E_10 10.5
LWA2010 LWA_10 10.566
LWAE2012 E_10 14.128
LWF2_2022 E_10 10.7

DB Program Definition E-Value

EST Name Species Strain