Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_05 |
Marker Type | SSR |
Map Position | 51.6 |
Annotation | |
Source Name | emk04D19 |
Source Type | genomic |
Source Sequence | ACCATCGTTAGAAAAGTTACAACTCAGGAAAAATCATAAC TCTTCGAAAAAATCAGAATCCTTCGAAAAAGTCACAACTT TTCGCAAAAGTCACAATCCTTCAATGTAAAAAATTATCTG TTAGAACCCGTATTGTGGTGTTTTGGATCAATTACGAATT TTGGACCAAAGAGATATTATTGAAAATTTGGGATTTAAGT TGAATATTTCAAAGAGATGTGTTTAAACCTATATACACAC ACACACACACACACACACACACACACACACACACACGTAC ACATACAAGACCATTTATTAATTTCTTTCACCAAATGTTT TGCTAAACACATGTAAATCTAGAGTTTTGATAAGGTTGGC CCACTTCATTTTGTCACAATATTATTGGACTAAGTGTGGG AGGTGGGCCAAGCTCTTGGTCTTTATATGTATGTATATGC TACTTGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ac)21 |
---|---|
PCR product (bp) | 287 |
fwd primer | emk04D19/U |
fwd primer seq. | cgcaaaagtcacaatccttcaatg |
rev primer | emk04D19/L |
rev primer seq. | atgaagtgggccaaccttatcaaa |
fluor. primer | emk04D19/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-agcaaaagtcacaatccttcaatg |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 288 | 288 |
EPL-1 | 286 | 286 |
LS1151 (S.linneanum) | 275 | 275 |
LS1934 | 284 | 284 |
LS4021 (S. incanum) | 283 | 283 |
Nakate Shinkuro | 284 | 284 |
Senryo 2 | 284 | 284 |
Shironasu | 284 | 284 |
WCGR112-8 | 286 | 286 |
White Egg | 286 | 286 |
PI 286106 | 286 | 286 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_05 | 51.6 |
ALF2 | AL05 | 50.4 |
LW2010 | E_05 | 45.0 |
LWA2010 | LWA_05 | 44.637 |
LWAE2012 | E_05 | 45.821 |
LWF2_2022 | E_05 | 47.3 |
N28F2 | E_05 | 57.7 |
NAF2 | NA05.1 | 15.3 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_MboI0141L10_T7_363031 Chromat_file:SL_MboI_141_L10-T7 SGN_GSS_ID:380242 (vector and quality trimmed) | 2e-08 |
TomatoBAC_end | BLASTN | SL_EcoRI0024G05_SP6_230945 Chromat_file:SL_EcoRI_024_G05-SP6 SGN_GSS_ID:247771 (vector and quality trimmed) | 2e-08 |
TomatoBAC_end | BLASTN | SL_EcoRI0093H12_T7_356903 Chromat_file:SL_EcoRI_093_H12-T7 SGN_GSS_ID:373729 (vector and quality trimmed) | 3e-07 |
EST Name | Species | Strain |
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