Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_02 |
Marker Type | SSR |
Map Position | 0.7 |
Annotation | |
Source Name | emk02M14 |
Source Type | genomic |
Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNC CTTCAATGCCAATGTTCAATCCCTTTAACACTTTTTTGTA ACCTGATTGAAGACATCAAAATAAGAATTTAATGGGATAA TTAGTTAAATTAATGGTGGAGCAGAGTAACTTTTATTATG GGGAAAGAGTGATAAGAACTTTCTCGGGAAACATGGGAAG AACTAAAGAATCCACCCAAACTCTCTATATTTCACATCTG TTTATCCAGACAACTCACAGAGCAGTGTGTGCGTTTGTGT GTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGTCAGGGA GAGAGAAACCTAGACAAAATTGATGGGGAGCTGCACCAAT GTTTGAGCCAACAATGCATCCTGTATCTCTTAATCTGGCG ATGAAATTAACTTTGACCTGGACAAAAGAAAGGATCATTC AGCAGCATGATGTTTGCACCATGTCTGTCTCAATTTTCAA ATAGAATCACCTGTTTTCCTGGAGAAGCAACTTTCCCGTC CGCTTTTCCCTTAACCAGCACCTCAACAGCCAGTCCATCC GGTAATGCATTTATCTGTGTTNNNNNC |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tg)3cgtt(tg)9(ag)10tcaggg(ag)3 |
---|---|
PCR product (bp) | 206 |
fwd primer | emk02M14/U |
fwd primer seq. | tctcgggaaacatgggaagaacta |
rev primer | emk02M14/L |
rev primer seq. | gatacaggatgcattgttggctca |
fluor. primer | emk02M14/U_NED |
dye | NED |
fluor. Primer seq. | NED-actcgggaaacatgggaagaacta |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 205 | 205 |
EPL-1 | 207 | 207 |
LS1151 (S.linneanum) | 203 | 203 |
LS1934 | 207 | 207 |
LS4021 (S. incanum) | 201 | 201 |
Nakate Shinkuro | 207 | 207 |
Senryo 2 | 205 | 205 |
Shironasu | 205 | 205 |
WCGR112-8 | 205 | 205 |
White Egg | 205 | 205 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_02 | 0.7 |
LWA2010 | LWA_02 | 1.474 |
LWAE2012 | E_02 | 2.127 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_EcoRI0013E08_SP6_291940 Chromat_file:SL_EcoRI_013_E08-SP6 SGN_GSS_ID:308766 (vector and quality trimmed) | 4e-07 |
EST Name | Species | Strain |
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