| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_11 |
| Marker Type | SSR |
| Map Position | 88.8 |
| Annotation | |
| Source Name | emk02K24 |
| Source Type | genomic |
| Source Sequence | ACACACACACACACACACACATATATACATACACACACAT ATATACATATGTATACCAAGAGGAGATTTTGGTAATAATT AAATTCACTAAGTCCCTTAATTGTTAATCAATGAGGTAGG CTAAACGACCTCTAAATTTGCAGTAAAAAGTTGAGTGTTA TATATATATATATATGTATGTATGTATGTATGTATGTGTA GAAATGTATATATTTACACACACACACACACACACACACA TATATATATATATATATATATATATATATGCACATAAATA TACATGTATATACATATATATACATGTATATATAATGTCG GGTTGATTTGGCCTCGGGTTGGTTTTTTAAAATCAAAACC AAACCAACCCAAATATAGTCAGGTTCTTTTTGTCAACACC AAAGTAAGTCAAGTCGAACCATTAGTCAGGTTGACTTGGT GTGCGATTTGGTTCAGGTTTCGGTTTGGTTTTGTTCACCC CTAGCAAACACCATCACATAAATTGAGATGAAAGAGAGTA TTTATGTATTAAGTAAAATTAGTTGAAATTTATATAAAGT ATTCTTTGAT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3ttt(ac)12a(ta)14tgcacataaatatacatg(ta)3ca(ta)4catg(ta)4 |
|---|---|
| PCR product (bp) | 288 |
| fwd primer | emk02K24/U |
| fwd primer seq. | ggtaggctaaacgacctctaaatttgc |
| rev primer | emk02K24/L |
| rev primer seq. | ttggtgttgacaaaaagaacctgac |
| fluor. primer | emk02K24/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-agtaggctaaacgacctctaaatttgc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 291 | 291 |
| EPL-1 | 291 | 291 |
| LS1151 (S.linneanum) | 301 | 301 |
| LS1934 | 249 | 249 |
| LS4021 (S. incanum) | 259 | 259 |
| Nakate Shinkuro | 265 | 265 |
| Senryo 2 | 291 | 291 |
| Shironasu | 249 | 249 |
| WCGR112-8 | 293 | 293 |
| White Egg | 249 | 249 |
| PI 286106 | 267 | 267 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_11 | 88.8 |
| EW2009 | LG01 | 17.6 |
| LW2010 | E_11 | 75.0 |
| LWA2010 | LWA_11 | 82.552 |
| LWAE2012 | E_11 | 79.436 |
| LWF2_2022 | E_11 | 102.2 |
| N28F2 | E_11 | 104.5 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0009A03_T7_226552 Chromat_file:SL_EcoRI_009_A03-T7 SGN_GSS_ID:243378 (vector and quality trimmed) | 2e-11 |
| TomatoBAC_end | BLASTN | SL_EcoRI0046F09_SP6_246147 Chromat_file:SL_EcoRI_046_F09-SP6 SGN_GSS_ID:262973 (vector and quality trimmed) | 9e-11 |
| TomatoBAC_end | BLASTN | SL_EcoRI0022E09_T7_229522 Chromat_file:SL_EcoRI_022_E09-T7 SGN_GSS_ID:246348 (vector and quality trimmed) | 9e-11 |
| TomatoBAC_end | BLASTN | SL_MboI0102O06_SP6_199626 Chromat_file:SL_MboI_102_O06-SP6 SGN_GSS_ID:216452 (vector and quality trimmed) | 9e-11 |
| TomatoBAC_end | BLASTN | LE_HBa0222H16_T7_399100 Chromat_file:LE_HBa_222_H16-T7 SGN_GSS_ID:416294 (vector and quality trimmed) | 5e-09 |
| EST Name | Species | Strain |
|---|
