Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_04 |
Marker Type | SSR |
Map Position | 10.6 |
Annotation | |
Source Name | emk02D15 |
Source Type | genomic |
Source Sequence | ACAATAAGCAACACAAAAATGAGAGTGGTCATACTGAACA AGCTTTTGAAGAACCACAGAGTAAGAAAAAAGATGTTGGC AATTCTGCCAGCAGAGAAGACACCAAACAAGCCCCTGTGC AAGGTATATATATATTTTATATTGTTCTTATATGATTATA ATACATTTTTTAAGTTGTCAAGTCTGTGTCTAATACTACA ATCTTATATATATTTTTTTCACACACACACACACACACGC ACACACATATATTATAATACATTTTAGCTGCCAAGTTTGC CAAATTAATACGATTATAATACATTTTTTTTTTTGTGTTT GTTACTGTAAATTTAATTTTGACTGCCAAATCTGTATCAG ATAGTTCATTGTTGAGTAAGGATGATGCGAAAGTTATAGT TACATCTGTATTAAATGATATTAGAGATGGTGGTAAAGCA GGTATTTTATCACCATATTAAAATACCTATACAATACAAT GTATGTAACACATTCTATTTAAGGGTGAATATATTTTTTG TCATACCAGATGTGAGTATACGGGATGTGAACAAGGGGAA AGCTCCTATTGAATTTGATGATGATGTAGGTTTTAAATAA AATCCATGAATAATTGATTTATTGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)4tttttttc(ac)9gc(ac)3(at)3 |
---|---|
PCR product (bp) | 193 |
fwd primer | emk02D15/U |
fwd primer seq. | agcagagaagacaccaaacaagcc |
rev primer | emk02D15/L |
rev primer seq. | tggcaaacttggcagctaaaatgt |
fluor. primer | emk02D15/U_NED |
dye | NED |
fluor. Primer seq. | NED-agcagagaagacaccaaacaagcc |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 196 | 196 |
EPL-1 | 196 | 196 |
LS1151 (S.linneanum) | 187 | 187 |
LS1934 | 194 | 194 |
LS4021 (S. incanum) | 190 | 190 |
Nakate Shinkuro | 196 | 196 |
Senryo 2 | 196 | 196 |
Shironasu | 196 | 196 |
WCGR112-8 | 194 | 194 |
White Egg | 196 | 196 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_04 | 10.6 |
EW2009 | LG05 | 42.8 |
LWA2010 | LWA_04 | 45.154 |
LWAE2012 | E_04 | 40.984 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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