+Marker Data: emk01O18

Crop eggplant
Population AL2010
Linkage Group E_01
Marker Type SSR
Map Position 51.1
Annotation
Source Name emk01O18
Source Type genomic
Source Sequence TGTTACTTGGGTTTGAGAGCGGTGATAATGATTATGTCCA TGTGATATGATATATATATATATGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTATATGTGTGTGTGTGTGTGTATG TGTGCGTGTGTTCTTCGATATATGGACGTCAAAGCCCAAC AATTTTTCAAGGTGATAAAAGGGAATAAGTTAAGTCTGAG CCACAGGAAAGGATATTGTCTTTACAACTTACAATAATGC AAACTCTGGTAAGAATAGAGAATTTTGGAATTTTAAAAAT AAATTTAGCTATATGAAAAATATCAACTAGTTGGTATTAA TAAGCATTCTTCTTAATCTTTCAGAATATAAGCTACTGCA CATTTTAACTCCCTGTTGGTTGCTCTCAAGTTAATAGCTA AAGTGACAGCATCCAGTAGATATCTCACGATTGTTGCTAT CATGTTAATCCAACCATTGTTTTCTAGCGCGATCTTTCCT TTAAGTTGAATGTTAGCTCTCAAAACTTTAAGTTTTAAGT AGTAAGTTATCACCTATCCATAAATGTGTTCATTTACATG TTGTGATGTTACTGTTACGATTGCATGTTAGTTCTCTATT TAGAAATCAGTTGTTAGAATTTGCTTACATATTTCTTCTC CCAGGATATTACTTACTGGT
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ta)6(tg)17tata(tg)8ta(tg)3c(gt)3tcttcg(at)3
PCR product (bp) 214
fwd primer emk01O18/U
fwd primer seq. acttgggtttgagagcggtgataa
rev primer emk01O18/L
rev primer seq. caatatcctttcctgtggctcaga
fluor. primer emk01O18/U_VIC
dye VIC
fluor. Primer seq. VIC-acttgggtttgagagcggtgataa
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 237 237
EPL-1 241 241
LS1151 (S.linneanum) 218 218
LS1934 243 243
LS4021 (S. incanum) 220 220
Nakate Shinkuro 233 233
Senryo 2 233 241
Shironasu 237 237
WCGR112-8 241 241
White Egg 231 231

Population Linkage Group Position
AL2010 E_01 51.1
LW2010 E_01 48.3
LWA2010 LWA_01 42.812
LWAE2012 E_01 46.648
LWF2_2022 E_01 146.4
NAF2 NA10 39.1

DB Program Definition E-Value

EST Name Species Strain