Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_03 |
Marker Type | SSR |
Map Position | 11.6 |
Annotation | |
Source Name | emk01J09 |
Source Type | genomic |
Source Sequence | ACACTCACATTTCCAACTTTTTAATGTTTCATTATTCTTT TGTTAAAAAAGAAAATTGCATAAAATTTTAAAGTTCAATT TCAAATTATCTAATATTTGTATTTCAGACATAGTCAACAT GAAAACTATTTTATTCCAATGAAATGTTCTTCAAAACTTA TAGTTCAGACTATCACAATTAATTTAGCAAGTACCTCTTA TATATAGATAGTGAATTGAGGATGGGACACTAAATGAAAG GGACCATAAGATGGGTATTCGCGATACAGGAAAGTTGTGT GAAGCTATAAGTTATGACTTTCCATGAGAATTTAGATAGT CTAGTTGAGTTGTCAATGTAGAGCAAACTAGTGTAAGCAT TCTTTATTGCCTTTAGTAACTAGGTTGATAGGGATTTATG TATGAATGACGATAAGTCTCCTCGTGTAATCCAAGACTTC CCTAATCACACACACACACACACACACACACACACACACA CACACATATATATATATATTGAATTTAAGTAATTTTGACT AAGAGGTTAGATAATAAGAGTGAATAAAGTGATTATGCAT GCCAATAAGAGTAGTAGGTATAGAAACATGCCTACAGAGC AAGAAGGAAGTTAAAAGTCGCATCCTAGAAGA |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ac)19a(ta)6 |
---|---|
PCR product (bp) | 190 |
fwd primer | emk01J09/U |
fwd primer seq. | tcctcgtgtaatccaagacttccc |
rev primer | emk01J09/L |
rev primer seq. | tccttcttgctctgtaggcatgtt |
fluor. primer | emk01J09/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-acctcgtgtaatccaagacttccc |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 190 | 190 |
EPL-1 | 190 | 190 |
LS1151 (S.linneanum) | 164 | 164 |
LS1934 | 219 | 219 |
LS4021 (S. incanum) | 198 | 198 |
Nakate Shinkuro | 190 | 190 |
Senryo 2 | 184 | 190 |
Shironasu | 194 | 194 |
WCGR112-8 | 190 | 190 |
White Egg | 188 | 188 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_03 | 11.6 |
LW2010 | E_03 | 38.3 |
LWA2010 | LWA_03 | 38.782 |
LWAE2012 | E_03 | 43.177 |
LWF2_2022 | E_03 | 41.9 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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