Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_08 |
Marker Type | SSR |
Map Position | 21.5 |
Annotation | |
Source Name | emk01F05 |
Source Type | genomic |
Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNTNNNNNNNNNNNNNNNNNNNNNNNNACTCTAACCACAC CATTTGAACTTCCAAAACTACAACCTGCACTTAGTATACA TACATACATATATATATATATGTGTGTGTGTGTGTGTGTG TGTATGTGTGTGTGTGTATATATGTGTGTGTGTGTGTGTG CACGCGTGCACAATTAAATTACCATTATAGTGTTCAACAC CAAGAGAGACACAAAGGAGATATAAATAACCATGGTATGT ATACAAAATGTTGGTGATGCAATGCAACGTCCAGTAACCA TAATGCATGTTTTTCCTACCATACCATCCGTTGATCAATC AGATTGAAACCCATTGGGGGCTTCACATGGATCATGTATT TGCCAGAACCATTTTTCATTGGCATAATCATATCTAGTCA AAATTATTTTCCTTCAGCTATTTATCAAATCTAATTGGAG CCATTTCTCTTTGGCTTTTATCAAATCTTGGTGGAACCAT TTGCTTTCGGTATTTTCATCAAATAGTGGGACTCAATCAA TCTTTCAAAAATAAGTACCACTGCAAGTTGAATTTCCAGA TCTCATGTTACTTTCAAGTAACTCTGAAAGTGTTGTGTTT GAGTGTTGGTCCCCCCNNNNNACTTAATGAGGAGTTGGAT GAAAAGAGGGGGAAGTAAAAGTCAGAAAAAATGGTGGAGG ATAATACCTTCTTGCATATGGTGGTCAGTATGGAGGGAGA GGAATGGAAGGTGTTTCGAAGACAAGATCAAATCAGTCCA TTATGTGAAATGGAATTGTTTGGTGACCTTATTTTTTTGG TGTAAACATAATTGTATAGAGGAATCTGAGGAGTTCGTAG AATTTCTAGGAGCTCTGTAAAGCTAGAGTGTATTTCTTTG TAATATGGTTTTAATGGTGGCCAGCATTCCCAATGCTGAA GAATACAACAGTAATTCCTTTTCTGATAGCTTTCATCATA GGCTCTTGTTCTGGTTTGAGTAGAGACATCGTGTTAGAAC TCGTACAATTGTGTTTTGATACCATAGCTAACATTTGAGG TCACTAGTGTCATTTTCAAAGTGATTCACAATTAAGTGCA CTTTTGAGGAATTTGAAATTTTAATCGGAAATCTTTGTGG AGGTTTGTGAAAATGAGCTTATGGACATTTGATATGTNNN NNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)6(tg)11ta(tg)6(ta)3(tg)9 |
---|---|
PCR product (bp) | 283 |
fwd primer | emk01F05/U |
fwd primer seq. | ccacaccatttgaacttccaaaac |
rev primer | emk01F05/L |
rev primer seq. | tgatcaacggatggtatggtagga |
fluor. primer | |
dye | |
fluor. Primer seq. | |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 285 | 285 |
EPL-1 | 285 | 285 |
LS1151 (S.linneanum) | ||
LS1934 | 271 | 271 |
LS4021 (S. incanum) | 285 | 285 |
Nakate Shinkuro | 269 | 269 |
Senryo 2 | ||
Shironasu | 285 | 285 |
WCGR112-8 | 285 | 285 |
White Egg | 285 | 285 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_08 | 21.5 |
LW2010 | E_08 | 35.7 |
LWA2010 | LWA_08 | 26.589 |
LWAE2012 | E_08 | 37.047 |
LWF2_2022 | E_08 | 35.2 |
DB | Program | Definition | E-Value |
---|---|---|---|
SGN_marker | BLASTN | SSR268 [ssr] | 2e-06 |
TomatoBAC_end | BLASTN | SL_MboI0002P01_T7_144274 Chromat_file:SL_MboI_2_P01-T7 SGN_GSS_ID:161104 (vector and quality trimmed) | 8e-41 |
TomatoBAC_end | BLASTN | SL_EcoRI0100C21_SP6_311548 Chromat_file:SL_EcoRI_100_C21-SP6 SGN_GSS_ID:328374 (vector and quality trimmed) | 4e-33 |
TomatoBAC_end | BLASTN | LE_HBa0240J11_T7_401514 Chromat_file:LE_HBa_240_J11-T7 SGN_GSS_ID:418708 (vector and quality trimmed) | 6e-17 |
TomatoBAC_end | BLASTN | LE_HBa0077P05_SP6_18776 Chromat_file:LE_HBa_077_P05-SP6 SGN_GSS_ID:18776 (vector and quality trimmed) | 8e-10 |
TomatoBAC_end | BLASTN | SL_EcoRI0129G07_T7_333834 Chromat_file:SL_EcoRI_129_G07-T7 SGN_GSS_ID:350660 (vector and quality trimmed) | 5e-08 |
EST Name | Species | Strain |
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