+Marker Data: emk01F05

Crop eggplant
Population AL2010
Linkage Group E_08
Marker Type SSR
Map Position 21.5
Annotation
Source Name emk01F05
Source Type genomic
Source Sequence NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNTNNNNNNNNNNNNNNNNNNNNNNNNACTCTAACCACAC CATTTGAACTTCCAAAACTACAACCTGCACTTAGTATACA TACATACATATATATATATATGTGTGTGTGTGTGTGTGTG TGTATGTGTGTGTGTGTATATATGTGTGTGTGTGTGTGTG CACGCGTGCACAATTAAATTACCATTATAGTGTTCAACAC CAAGAGAGACACAAAGGAGATATAAATAACCATGGTATGT ATACAAAATGTTGGTGATGCAATGCAACGTCCAGTAACCA TAATGCATGTTTTTCCTACCATACCATCCGTTGATCAATC AGATTGAAACCCATTGGGGGCTTCACATGGATCATGTATT TGCCAGAACCATTTTTCATTGGCATAATCATATCTAGTCA AAATTATTTTCCTTCAGCTATTTATCAAATCTAATTGGAG CCATTTCTCTTTGGCTTTTATCAAATCTTGGTGGAACCAT TTGCTTTCGGTATTTTCATCAAATAGTGGGACTCAATCAA TCTTTCAAAAATAAGTACCACTGCAAGTTGAATTTCCAGA TCTCATGTTACTTTCAAGTAACTCTGAAAGTGTTGTGTTT GAGTGTTGGTCCCCCCNNNNNACTTAATGAGGAGTTGGAT GAAAAGAGGGGGAAGTAAAAGTCAGAAAAAATGGTGGAGG ATAATACCTTCTTGCATATGGTGGTCAGTATGGAGGGAGA GGAATGGAAGGTGTTTCGAAGACAAGATCAAATCAGTCCA TTATGTGAAATGGAATTGTTTGGTGACCTTATTTTTTTGG TGTAAACATAATTGTATAGAGGAATCTGAGGAGTTCGTAG AATTTCTAGGAGCTCTGTAAAGCTAGAGTGTATTTCTTTG TAATATGGTTTTAATGGTGGCCAGCATTCCCAATGCTGAA GAATACAACAGTAATTCCTTTTCTGATAGCTTTCATCATA GGCTCTTGTTCTGGTTTGAGTAGAGACATCGTGTTAGAAC TCGTACAATTGTGTTTTGATACCATAGCTAACATTTGAGG TCACTAGTGTCATTTTCAAAGTGATTCACAATTAAGTGCA CTTTTGAGGAATTTGAAATTTTAATCGGAAATCTTTGTGG AGGTTTGTGAAAATGAGCTTATGGACATTTGATATGTNNN NNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ta)6(tg)11ta(tg)6(ta)3(tg)9
PCR product (bp) 283
fwd primer emk01F05/U
fwd primer seq. ccacaccatttgaacttccaaaac
rev primer emk01F05/L
rev primer seq. tgatcaacggatggtatggtagga
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 285 285
EPL-1 285 285
LS1151 (S.linneanum)
LS1934 271 271
LS4021 (S. incanum) 285 285
Nakate Shinkuro 269 269
Senryo 2
Shironasu 285 285
WCGR112-8 285 285
White Egg 285 285

Population Linkage Group Position
AL2010 E_08 21.5
LW2010 E_08 35.7
LWA2010 LWA_08 26.589
LWAE2012 E_08 37.047
LWF2_2022 E_08 35.2

DB Program Definition E-Value
SGN_marker BLASTN SSR268 [ssr] 2e-06
TomatoBAC_end BLASTN SL_MboI0002P01_T7_144274 Chromat_file:SL_MboI_2_P01-T7 SGN_GSS_ID:161104 (vector and quality trimmed) 8e-41
TomatoBAC_end BLASTN SL_EcoRI0100C21_SP6_311548 Chromat_file:SL_EcoRI_100_C21-SP6 SGN_GSS_ID:328374 (vector and quality trimmed) 4e-33
TomatoBAC_end BLASTN LE_HBa0240J11_T7_401514 Chromat_file:LE_HBa_240_J11-T7 SGN_GSS_ID:418708 (vector and quality trimmed) 6e-17
TomatoBAC_end BLASTN LE_HBa0077P05_SP6_18776 Chromat_file:LE_HBa_077_P05-SP6 SGN_GSS_ID:18776 (vector and quality trimmed) 8e-10
TomatoBAC_end BLASTN SL_EcoRI0129G07_T7_333834 Chromat_file:SL_EcoRI_129_G07-T7 SGN_GSS_ID:350660 (vector and quality trimmed) 5e-08

EST Name Species Strain