+Marker Data: emk01C06

Crop eggplant
Population AL2010
Linkage Group E_03
Marker Type SSR
Map Position 0.0
Annotation
Source Name emk01C06
Source Type genomic
Source Sequence ACGTCATCAATCTTTCACGTCATCCCAGTTCCTGCTCTTC AAAAGGTAATTGTCCAGACTCTATTCCTTCTCGTGTTGTT TGAATGTGGCTGTTAGATTATGGGAGATAGTATGACCTAT TTTGGTCATGTTTGGGGGATACGAAATAGTCATGTTATAA TGTTTAATGCTGATGTTGCTGCTGTTATTGCCTGTGGTGA TTTGTATGGCTGTGGAATTAGGATCGATACGGGTTTTGTG TGTCTCTGCTTAACGCCTTTGGGTGGTCTCCAGCTCTTTC CTTTTCTAGCCAAGCAAATGTTTTAAAATGATCATTTCAT ATCATTTTAATGTGTTATGTTAAACATTTGATTTGTGTTG TGACTATCGATTGAAATGATTTCAAGTTTATGATGATGTG CTGGAGAATCTTTCTCCATTTTTGTCTTTATTTTAGATGT TGTTTCAACTTTTCTTCTTTTTACATCTGTCAAGATTAGA TGAACGTAACCGATGACTGCTTTAATTCTTGTTGGAACAT GACTTGTTTATTGATGTCTGAGGTCTAACATGTTACAGTT TGCCTTTCTGGGTGTCATCTCCATGTATTTAAGTCACAGT CGTAAGTATAGTCTAGTAGAATGCTAATTAAGTAGTTTTG CTTTCATCTTGTTCGGTCTATCCTGAATCTGAAGTTTTGG GGTCACAAATAATATATATATATGTGTGTGTGTGTGTGTG TGTGTGTTTTCACTAAAAGTTTACTGAAAATGCATAAAGC ATGAGTGTGTTTCTCGTTTGTGCTTCTGCTAGCAA
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ta)5(tg)12
PCR product (bp) 241
fwd primer emk01C06/U
fwd primer seq. tacagtttgcctttctgggtgtca
rev primer emk01C06/L
rev primer seq. tgctagcagaagcacaaacgagaa
fluor. primer emk01C06/U_FAM
dye FAM
fluor. Primer seq. FAM-atcagtttgcctttctgggtgtca
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 244 244
EPL-1 246 246
LS1151 (S.linneanum) 205 205
LS1934 254 254
LS4021 (S. incanum) 297 297
Nakate Shinkuro 246 246
Senryo 2 246 246
Shironasu 246 246
WCGR112-8 246 246
White Egg 246 246

Population Linkage Group Position
AL2010 E_03 0.0
LWA2010 LWA_03 27.207
LWAE2012 E_03 53.956

DB Program Definition E-Value

EST Name Species Strain