Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_03 |
Marker Type | SSR |
Map Position | 0.0 |
Annotation | |
Source Name | emk01C06 |
Source Type | genomic |
Source Sequence | ACGTCATCAATCTTTCACGTCATCCCAGTTCCTGCTCTTC AAAAGGTAATTGTCCAGACTCTATTCCTTCTCGTGTTGTT TGAATGTGGCTGTTAGATTATGGGAGATAGTATGACCTAT TTTGGTCATGTTTGGGGGATACGAAATAGTCATGTTATAA TGTTTAATGCTGATGTTGCTGCTGTTATTGCCTGTGGTGA TTTGTATGGCTGTGGAATTAGGATCGATACGGGTTTTGTG TGTCTCTGCTTAACGCCTTTGGGTGGTCTCCAGCTCTTTC CTTTTCTAGCCAAGCAAATGTTTTAAAATGATCATTTCAT ATCATTTTAATGTGTTATGTTAAACATTTGATTTGTGTTG TGACTATCGATTGAAATGATTTCAAGTTTATGATGATGTG CTGGAGAATCTTTCTCCATTTTTGTCTTTATTTTAGATGT TGTTTCAACTTTTCTTCTTTTTACATCTGTCAAGATTAGA TGAACGTAACCGATGACTGCTTTAATTCTTGTTGGAACAT GACTTGTTTATTGATGTCTGAGGTCTAACATGTTACAGTT TGCCTTTCTGGGTGTCATCTCCATGTATTTAAGTCACAGT CGTAAGTATAGTCTAGTAGAATGCTAATTAAGTAGTTTTG CTTTCATCTTGTTCGGTCTATCCTGAATCTGAAGTTTTGG GGTCACAAATAATATATATATATGTGTGTGTGTGTGTGTG TGTGTGTTTTCACTAAAAGTTTACTGAAAATGCATAAAGC ATGAGTGTGTTTCTCGTTTGTGCTTCTGCTAGCAA |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)5(tg)12 |
---|---|
PCR product (bp) | 241 |
fwd primer | emk01C06/U |
fwd primer seq. | tacagtttgcctttctgggtgtca |
rev primer | emk01C06/L |
rev primer seq. | tgctagcagaagcacaaacgagaa |
fluor. primer | emk01C06/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-atcagtttgcctttctgggtgtca |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 244 | 244 |
EPL-1 | 246 | 246 |
LS1151 (S.linneanum) | 205 | 205 |
LS1934 | 254 | 254 |
LS4021 (S. incanum) | 297 | 297 |
Nakate Shinkuro | 246 | 246 |
Senryo 2 | 246 | 246 |
Shironasu | 246 | 246 |
WCGR112-8 | 246 | 246 |
White Egg | 246 | 246 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_03 | 0.0 |
LWA2010 | LWA_03 | 27.207 |
LWAE2012 | E_03 | 53.956 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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