+Marker Data: emj05C16

Crop eggplant
Population AL2010
Linkage Group E_08
Marker Type SSR
Map Position 30.0
Annotation
Source Name emj05C16
Source Type genomic
Source Sequence NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNN NNNNNNNNNNNNNNNNNNNATTTCACTTTTTCATGATTTT TATCGTGCTATAGAACATGTCTTGAGATTTTTTGTCTCGA TTCCTCCCTATCGGGTAAGGAGAGTTACTTTAGGCTCATA ATGCAATCAAGCAAGGAGGATTTTGTAGTTGATCTTATAT ATAAGGTTAGATGGGAGTTGGTGAAGAAAAGAAGGAGTTG GCAAAAGATATTTACTGTTTGGCTAGATTGGGTGTTACGT TGGGCTTCAACATGTGGAACTTCAAGATTTTCAAAAGCTT TTGAGGGGCATGCCCCATTGTACTGCCTGATTTATACAAC TATTATCCCAGCTGTCATTTCTTTTGTTGTCCAATGGTTC AAAGACCTATCCTCATCTGCTCCGACAGAGTGCCTCACTG GCGCAAAAAATCTGGCAGAATTGTTCTTGGGATTTCCATC TTGTCACAACCTTTGATTTTACCTTAGAAGCTTCCTTTAA TATTTCACATAGCCACAACATGGCACTCTGATTGAATNNN NNAGAAGGCTGTCAGAAAAAAGGTGTAAACCATAGCAAAG TAAATCTTCTGTTCACCCACTGTAGACTAGTCTCCAAAAA AGAAAAGAAACGCGAGTGACTTCCGGAGCAGAAGGCTATC AGAAAGAGTTGTTCTATCCTCCTATGAAGTAGGGGAGAGA AATTCTTTGGATATTGTGCATGGGAGCATTTTCTTAGTCT CTGGAGCTATTCTTGTTGTATGGTCATACCCTCTGTATCT TAAAGTTCGGATCATGACTCCATCCTCTGGATCCGCACCT CCATCGGACACCCGCAATGGAGTCTGACCAACTTAAGCAG TAGCTCCTCCCATAACTCATGTGGTGGTGGTGGGTGTGTG TGTGTGAGTGTGGTGTGGGGGTGTGGGTGGGTATAATACC CTTAGAGACAATTCCTCCCTGAATTGGATTGACTTTCTGT GTATGTTGAGGAAGTCTGTATTTGTCTTCCTTATGTGAAT GGAAGTNNNNNNNNNNNNNNNNNNNNNNNNAANNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153
motif (ggt)3ggg(tg)6
PCR product (bp) 191
fwd primer emj05C16/U
fwd primer seq. gttcggatcatgactccatcctct
rev primer emj05C16/L
rev primer seq. aagtcaatccaattcagggaggaa
fluor. primer emj05C16/U_FAM
dye FAM
fluor. Primer seq. FAM-attcggatcatgactccatcctct
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq
Line allele-1 allele-2
AE-P03 198 198
EPL-1 201 201
LS1151 (S.linneanum) 208 208
LS1934 200 200
LS4021 (S. incanum) 198 198
Nakate Shinkuro 198 198
Senryo 2 198 198
Shironasu 200 200
WCGR112-8 198 198
White Egg 200 200
Population Linkage Group Position
AL2010 E_08 30.0
LW2010 E_08 38.4
LWA2010 LWA_08 32.442
LWAE2012 E_08 33.291
LWF2_2022 E_08 38.1
N28F2 E_08 49.5
DB Program Definition E-Value
EST Name Species Strain