Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_11 |
Marker Type | SSR |
Map Position | 68.6 |
Annotation | |
Source Name | emj04D04 |
Source Type | genomic |
Source Sequence | CCTACTCTGTTGCTGCTGAAACTGCCTATCCTAGAAATTT GTTGCTGAACTGAATGACCTAGCCCTCTTAGGCGACCCTC AAGCTAAATGGAATTTCAATTACAATGACCAACTAAATTA CCAAAATTTTGACAAAGTCTCCTCTGTTTTACTGACTACC CACCTGCATATAAAAAATCCTAGCCTACAATACATACATA CATACATATATACATACATATATATATATATATATATATA TATATATACGGGTCGACAAGGTCACCGCTGCGGTTAAACC TTCCAACATATATAACATACTTACATAATATACAGACTGA CGTCTCCCATCCTCACAAGAGTACACAGACCTCTATACGA ATAGACCGAATCATAGGACGGGATTGGGCCATGGCAATAG AATCTGGGAGGGAGGACTAATAATTGTAGAGAAATGTATT TGATGAATTTTTACAATGTTTAAAATAATGA |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)3cataca(ta)15 |
---|---|
PCR product (bp) | 238 |
fwd primer | emj04D04/U |
fwd primer seq. | aatgacctagccctcttaggcgac |
rev primer | emj04D04/L |
rev primer seq. | tatgttggaaggtttaaccgcagc |
fluor. primer | emj04D04/U_NED |
dye | NED |
fluor. Primer seq. | NED-attgacctagccctcttaggcgac |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 239 | 239 |
EPL-1 | 239 | 239 |
LS1151 (S.linneanum) | ||
LS1934 | 247 | 247 |
LS4021 (S. incanum) | 236 | 236 |
Nakate Shinkuro | 243 | 243 |
Senryo 2 | 239 | 239 |
Shironasu | 241 | 241 |
WCGR112-8 | 237 | 237 |
White Egg | 237 | 237 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_11 | 68.6 |
ALF2 | AL11 | 79.3 |
EW2009 | LG01 | 21.4 |
LW2010 | E_11 | 71.3 |
LWA2010 | LWA_11 | 69.151 |
LWAE2012 | E_11 | 68.712 |
LWF2_2022 | E_11 | 88.1 |
NAF2 | NA11 | 97.5 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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