Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_01 |
Marker Type | SSR |
Map Position | 51.1 |
Annotation | |
Source Name | emj01A18 |
Source Type | genomic |
Source Sequence | CCTTACGTGGGATGTTGGAGCTTAATCATGGAGTTTTGGA CTAAGGCATGTCACACATAGACTCCACACGTACGTGTGAG GCTTCACGGTAGCCTTAGTCTTGAAATTCCATAGTTTTGA GACCAAGTAAAGTGGGATGGCCGAATTAGTACATGTATGT ATATATAGTGTTATGTTATGATGGAATGATGAATTGATGC TTGGTTGGCATGATATGATCATTGTAGTGTAAAGAAATGG ATGGAAATCATCTAAATGTATATGTTGGTGCTGCGGTCCA TTTTTTATAAATGTGATAAAGTGATGGTATTTAGTGTTAT TCTTGTTATAATGGCATTGGAAGTGCTTAGTAATGTTGTT GTTGTTGTTGTTGTTGCTGTTATTGTTGTTGTGTTGATTA ATTGGAGCCGAGATGGATTCTCGGGGTGGTCTATTTTAAG AGAAAGTGCTGTCAAAATTTTTATAAAAATTTAAGACGAA TTTGGGATTTAAGGCCGAAAAGGGCTTTTAGCTAACCGTT GGCGTTGTTGTGATATGTTGTAGACGTGGACGTCCAGGAG CATAAATTGGATTGGATTTGCATTTGGATTAATTTGGACA GGTGATTGAGGTATGTAAAGCATTTCGTTCTTTGGCATGA TTTTGTTAAACTTAGCTAACATCATAAGTTTGAAAGCCAC TCAGTTCCAGATGTGCTAAGAGTTATGTTAGTTTAAAATT GACCCTTCTACCGGTACTTGTGTCGAAGTTAGCCAACGGA AAATCCTTTGAACTTGTCTTGACTTAGGGGTCCCATAATG G |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tgt)7tgctgttat(tgt)3 |
---|---|
PCR product (bp) | 182 |
fwd primer | emj01A18/U |
fwd primer seq. | aatgtatatgttggtgctgcggtc |
rev primer | emj01A18/L |
rev primer seq. | aaatagaccaccccgagaatccat |
fluor. primer | emj01A18/U_NED |
dye | NED |
fluor. Primer seq. | NED-attgtatatgttggtgctgcggtc |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 194 | 194 |
EPL-1 | 191 | 191 |
LS1151 (S.linneanum) | 179 | 179 |
LS1934 | 191 | 191 |
LS4021 (S. incanum) | 179 | 179 |
Nakate Shinkuro | 197 | 197 |
Senryo 2 | 191 | 191 |
Shironasu | 197 | 197 |
WCGR112-8 | 191 | 191 |
White Egg | 191 | 191 |
PI 286106 | 193 | 193 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_01 | 51.1 |
ALF2 | AL01 | 43.7 |
LWA2010 | LWA_01 | 42.996 |
LWAE2012 | E_01 | 46.925 |
N28F2 | E_01 | 113.7 |
NAF2 | NA01 | 15.6 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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