| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 29.6 |
| Annotation | |
| Source Name | emi05G09 |
| Source Type | genomic |
| Source Sequence | CTAACCACCCTGCACAAAGACAGACCCAGCAAACAGATCA AACACACACACACACACACACACATATATATATATATATA TACGCGGGCCAACAAGGTCACCGTTGCAGTTAAATCGCCT AACAAACACAGCATATGTATATGATATACAGACTGACTAA CATGTCCAACATACCCAGCATAAGTACATACTATACAGAC TGACTGACATAGCCAACACACCCATAGTAGTCCACAGATC TCTAATATGAACAAACTGAATCATAAGACGGGACAGGGCC CCTGTCGTGCCCTCAAATATACATGATACAAAGTGATAAA GTAGTATGTGTACCAAAAGTGGCTCCGAAGCAAAGGAGCC CTCCAAACTACAACCAGGTGTCCTAGGCTAGTGGCCTGCT AATCTATGCATCGGTGCCTGCGAGTATGAAACGCAGCCCC CGAATGAAGGGGGTCAGTACGAGGTACGTACCGAATATGT AAAAGAAGAGTATAAAATGTAAATGAGAGTAATAGTCCAA ACAGAGGTAAGAAAAGGTCAACTCATATGCAAATGCCAAA GGAGTATTTCTTTTGCCTTTCCAAAATGTCGAACTAATGC CTAATGGATCGGAATGATGGCGACCTCCAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)11a(ta)9 |
|---|---|
| PCR product (bp) | 223 |
| fwd primer | emi05G09/U |
| fwd primer seq. | ctaaccaccctgcacaaagacaga |
| rev primer | emi05G09/L |
| rev primer seq. | gggtgtgttggctatgtcagtcag |
| fluor. primer | emi05G09/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-ataaccaccctgcacaaagacaga |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 224 | 224 |
| EPL-1 | 224 | 224 |
| LS1151 (S.linneanum) | 177 | 177 |
| LS1934 | 247 | 247 |
| LS4021 (S. incanum) | 217 | 217 |
| Nakate Shinkuro | 224 | 224 |
| Senryo 2 | 224 | 224 |
| Shironasu | 263 | 263 |
| WCGR112-8 | 224 | 224 |
| White Egg | 253 | 253 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 29.6 |
| LW2010 | E_08 | 38.4 |
| LWA2010 | LWA_08 | 32.206 |
| LWAE2012 | E_08 | 33.067 |
| LWF2_2022 | E_08 | 38.1 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
