Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_10 |
Marker Type | SSR |
Map Position | 80.6 |
Annotation | |
Source Name | emi03K06 |
Source Type | genomic |
Source Sequence | TTTTCAAAAAGTAAAATTTTTGTAGAAGTTTTGTGGTGCC ACGTAGATGGGATGTTCATCTCCTTATATATATATATATA TATATATATATATATATATATATGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGATATGA TTTTTCAACTAAATCTGTTTAATTTTGAAATTTTGCTTTT CTCTTTCTCTTTTTCTTTCAGATCTACAGGGAATTGTTAG ATAGATATAATTCATACATTATGATATGCTTATCATTTTG CTGCAATGACAATTACCCTGCACCTTTAATTTTCAAGTTA TAAGTTTCGATCATCAAGGAAGTAAAACGGATGGACATTC CTAGAAAAAACTAAAATATTAATTAAAGAATGATTCAATA AATTAATTTTTTTAAAGCAAAAGAAATACCCCAAGATCAT GTAAAAATTATGTACTTACTGAGGAGGAGTTGTTATTAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)19(tg)23 |
---|---|
PCR product (bp) | 281 |
fwd primer | emi03K06/U |
fwd primer seq. | aagttttgtggtgccacgtagatg |
rev primer | emi03K06/L |
rev primer seq. | aaggtgcagggtaattgtcattgc |
fluor. primer | emi03K06/U_NED |
dye | NED |
fluor. Primer seq. | NED-atgttttgtggtgccacgtagatg |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 288 | 288 |
EPL-1 | 288 | 288 |
LS1151 (S.linneanum) | 200 | 200 |
LS1934 | 298 | 298 |
LS4021 (S. incanum) | 294 | 294 |
Nakate Shinkuro | 288 | 288 |
Senryo 2 | 288 | 288 |
Shironasu | 294 | 294 |
WCGR112-8 | 292 | 292 |
White Egg | 280 | 280 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_10 | 80.6 |
EW2009 | LG09 | 57.4 |
LW2010 | E_10 | 56.5 |
LWA2010 | LWA_10 | 62.339 |
LWAE2012 | E_10 | 67.503 |
LWF2_2022 | E_10 | 59.2 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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