Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_03 |
Marker Type | SSR |
Map Position | 8.9 |
Annotation | |
Source Name | emi03G16 |
Source Type | genomic |
Source Sequence | CTAATGTAGAAGAAATACCCTCATTTATTTCTCGTATCTG CAGGTAACTCAATTTCATTGTTAACTTTGTTGTATGATAG TTAAACTTTTCAATGTTGGATGTTGTGTTATAGTTGGAAA TTCATAAAGTTCATGTGACATTGAAGGACGAATGCTCTTA AGGGGGAAAGGATGTTAGAACCCGTATTTTTGTGCATTGG AGCGGTTACGGAGATTTGAGACCTAAGTGTCAATTTTAGA AAATTTAGGACCAAAGAGACATTATCAGAAAGTTTGGGGT CAAAGTTGAATATTTCAAAGAGGTGTGTGTATGACCCTAT ATATACATATATATATGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTACACTTGTACACATACAAGACCATTA ACTAATTGTCTTTCACAAAATGTGTTGCAAAAAATCTAGA ATGTTGATAAGGTTGGCCCACTTAACTTTGTCACATTTCT ATTGGTACACTTGTGGGATGTGGGACCAAGATTTTTCTTT GGCTCTAACTATATATGTACAACACATGTACAAGATAACA TACATACTCTCCCACACTTAGAAAAAAAACAACATCATCA AGACCCTTCTCTTCTTGCTCTCGGGTTGCTACAGTAAGTA GCACCCATAATTCACTTTCTTCGATCTTTGAATTATTTTG ACGCTACAAGCCTAGTATATTAGACCCCCTAAGTAGTACG AAAGCGTTGGTTTGTCAAGAAAATACTTCGTAATTCAAAT TTGGCGATTTGAATTCCTTAAAGGGTTTATAAGTTATGTT GATTTTAATCTTGTTTTAGCTAAATTTAAAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tg)3tatgaccc(ta)4ca(ta)4(tg)19 |
---|---|
PCR product (bp) | 284 |
fwd primer | emi03G16/U |
fwd primer seq. | aacccgtatttttgtgcattggag |
rev primer | emi03G16/L |
rev primer seq. | agtgggccaaccttatcaacattc |
fluor. primer | emi03G16/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-atcccgtatttttgtgcattggag |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 277 | 277 |
EPL-1 | 286 | 286 |
LS1151 (S.linneanum) | 275 | 275 |
LS1934 | 283 | 283 |
LS4021 (S. incanum) | 281 | 281 |
Nakate Shinkuro | 277 | 277 |
Senryo 2 | 275 | 275 |
Shironasu | 277 | 277 |
WCGR112-8 | 277 | 277 |
White Egg | 277 | 277 |
PI 286106 | 275 | 275 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_03 | 8.9 |
EW2009 | LG10 | 32.1 |
LW2010 | E_03 | 36.5 |
LWA2010 | LWA_03 | 36.569 |
LWAE2012 | E_03 | 45.938 |
LWF2_2022 | E_03 | 38.5 |
N28F2 | E_03 | 15.2 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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