Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_08 |
Marker Type | SSR |
Map Position | 0.0 |
Annotation | |
Source Name | emi03C09 |
Source Type | genomic |
Source Sequence | CTCAGATCGTTCAGGTAACCTCACATGCAGGTTGTCTTCT TTATAAGGGGGAAACTTATTAAGTTGATCTGATTATATTT CTTTCTTTTATGTATATATGTTTCAGATTATGTTAAAGCC ACAAGAAAGAATTATTGCAAAACCTGGTATGTTGCTAATC ATATGCTTTATATGTATTCTGCTTTTGCATCCTCTGGATG CCTATAGTAATGAAATTACTTTCCTGATCAAAATACACAG ACACACACACACACACACACACTCTATAAGGGGAGGCCTC TTGCTTATCAAACTTAAGTCCTTTTCTTTTCTTTTTTTTT AAAAAAGAAGCCTGTGGTGTTCGGGCGAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ac)11 |
---|---|
PCR product (bp) | 170 |
fwd primer | emi03C09/U |
fwd primer seq. | tattctgcttttgcatcctctgga |
rev primer | emi03C09/L |
rev primer seq. | ccgaacaccacaggcttcttttt |
fluor. primer | emi03C09/U_PET |
dye | PET |
fluor. Primer seq. | PET-atttctgcttttgcatcctctgga |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 178 | 178 |
EPL-1 | 174 | 174 |
LS1151 (S.linneanum) | 152 | 152 |
LS1934 | 175 | 175 |
LS4021 (S. incanum) | 178 | 178 |
Nakate Shinkuro | 174 | 174 |
Senryo 2 | 174 | 174 |
Shironasu | 174 | 174 |
WCGR112-8 | 174 | 174 |
White Egg | 174 | 174 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_08 | 0.0 |
ALF2 | AL08 | 0.0 |
LWA2010 | LWA_08 | 0.01 |
LWAE2012 | E_08 | 5.049 |
NAF2 | NA08 | 0.0 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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