Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_05 |
Marker Type | SSR |
Map Position | 53.9 |
Annotation | |
Source Name | emi02K11 |
Source Type | genomic |
Source Sequence | CTAATGTAATTTCATATTGTCTCTCCTATACTGTTTACTT TAGCCTGTTTTACATACAGTACACTTCACGTACTAATGCC CCTTTGGTAGCCTGTTTTACATACAGTACACTTCACGTAC TAATGCCCCTTTGGTGCTGTATCATTTTATGATGCAGATT CAGTAGACAGAGCACTTCAACAGGCAAATCGTTGAGGTTA AGAGATTTCCTGATTTCCAGATAGTGGTGAGTCCTTCCCT GCATTCAAGGATGTTTTCTTATTTTCAGATGTTCACGTTA TTTCTTTTGAGTTGTGGTAGCCACGACCTGTCATGGTACC TTCTTAGACAGTAGTTATAGAGGCTTCATAGGCACAAATA GATGATGGGACTCTTTCCCCTTTCTCTATTTTTAAACTGT GTCCTTTTGTTAATCTTGTTCCATGTAATAGATAGAATTG ATGAGTCTTGTAGCCCACTGATAACTTAGATTATTCTTTA ATATCTTCTGCTAATCAACTGATTGAATGAATGTGATGAG ACTAGGTGGTTCACTTGGGGGCTAGCAATAGTCTTCGAGT GCCAATTATGCCTAGGGTACCCTCTCGGGGCATTACATAC TCTTTTCGAAATGAGACAATACCTTCTTAAGATTTTCTGG CTCTCTATCATCACTAGTGGGAACATACTTTAAAAAAAGG TATTTAAATAACTCTATCGTTATCTTTTCTAATCTCTACA GAGGTTGATAAAGCCTGTTAGAGCCCATCTATACACACAT ACATACACACACACACACACACACACACATATATATTACA CTCACAACTATAGAGTACATGGCCAACGTTTGAAATATAA TAGACATTCATCAAAACAGAAGGTGAGTGCTGAATGTCCA TAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ac)3atacat(ac)12a(ta)3 |
---|---|
PCR product (bp) | 299 |
fwd primer | emi02K11/U |
fwd primer seq. | gggggctagcaatagtcttcgagt |
rev primer | emi02K11/L |
rev primer seq. | tttcaaacgttggccatgtactct |
fluor. primer | emi02K11/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-aggggctagcaatagtcttcgagt |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 299 | 299 |
EPL-1 | 299 | 299 |
LS1151 (S.linneanum) | 291 | 291 |
LS1934 | 297 | 297 |
LS4021 (S. incanum) | 313 | 313 |
Nakate Shinkuro | 297 | 297 |
Senryo 2 | 297 | 297 |
Shironasu | 297 | 297 |
WCGR112-8 | 297 | 297 |
White Egg | 297 | 297 |
PI 286106 | 300 | 300 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_05 | 53.9 |
ALF2 | AL05 | 53.4 |
EW2009 | LG14 | 13.3 |
LWA2010 | LWA_05 | 46.072 |
LWAE2012 | E_05 | 48.736 |
N28F2 | E_05 | 63.6 |
NAF2 | NA05.1 | 16.5 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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