Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_04 |
Marker Type | SSR |
Map Position | 7.9 |
Annotation | |
Source Name | emi02I08 |
Source Type | genomic |
Source Sequence | CTTCTTATCGTTCCACGATATTAACTTAGGTGCTTCTTGG GAGGCAAACCAAGGTATACCCCTTGCACCTTTTCTTTGTG TTGTTACTATGAGAACAAAGTATCCTATATTTGGCGGGGT GGTAGAAGTTATGGATTAAGGTGAAGTCTGAGTAGCCTCG GGTCCATAACTTCCCCTATTTTTAATCCCAAGGTTTTCTT GTCGTGCTTCTTTTTTCTTGTAGATTTTTATTTTCATGTT GAACCGGCATGTTTAGGTAGTATAGATAATGGATAAATTC ATAGTAATGTTATCATTTGGCACACACACACACACACACA CATATATATATTTCTTTAGATTTTCTTTAACCTTTTGATG CAAAAATTTGGTACCCTCAAAGTTTTTAAGGTTGTGAGTA TTGAGGCATTCATACATTTGTGAGTATCTGGCAATGTTTG TTCTGATATTGTTAAGGTAAGCTGAGTGTGAAAGCATGAC CTGTGAGTCTATACTTGATTGTGAATGCAATTGTCATGTG TGCTGTGAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ac)10a(ta)4 |
---|---|
PCR product (bp) | 297 |
fwd primer | emi02I08/U |
fwd primer seq. | ccaaggttttcttgtcgtgcttct |
rev primer | emi02I08/L |
rev primer seq. | acaggtcatgctttcacactcagc |
fluor. primer | emi02I08/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-acaaggttttcttgtcgtgcttct |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 302 | 302 |
EPL-1 | 302 | 302 |
LS1151 (S.linneanum) | 250 | 250 |
LS1934 | 300 | 300 |
LS4021 (S. incanum) | 300 | 300 |
Nakate Shinkuro | 302 | 302 |
Senryo 2 | 302 | 302 |
Shironasu | 302 | 302 |
WCGR112-8 | 302 | 302 |
White Egg | 302 | 302 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_04 | 7.9 |
LW2010 | E_04 | 42.2 |
LWA2010 | LWA_04 | 43.505 |
LWAE2012 | E_04 | 42.982 |
LWF2_2022 | E_04 | 62.7 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | LE_HBa0034A12_SP6_7318 Chromat_file:LE_HBa_034_A12-SP6 SGN_GSS_ID:7318 (vector and quality trimmed) | 5e-06 |
EST Name | Species | Strain |
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