Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_11 |
Marker Type | SSR |
Map Position | 49.3 |
Annotation | |
Source Name | emi02E03 |
Source Type | genomic |
Source Sequence | CTCGTTTCCTTGGATTTTGGTGCTGAGGTGAGCCTTCACA TTGTTCGTAGAGGCTACTACTTCAGCTTTATCTAGTATAG TTTATGTTTTTCTTCTTTTTGGGGGTTATATACCCGTCAG TTAAACTCATATCACTCTATTAGATGCTCCATGACCTTAT TGTGGGATTTGGGCTAGAGATATTTTATTAAGTGACCTTT TCCTTTCATAAATTGATATGCGATTTTTGTTTGCTAGTTA CTCTATTGTTATGAGTATTGATGAGTTTTGGAGTTGCTTA TATATTCTTAGTGCTTGGATAGTTTGGATGTGTATGAATA TTTGGTTCTCCCGACAAATAGTATGGCGGGTGCCAGTCAC ATCTAGGGGTATTTTGGGATGTGACAAGTCTTCCCTCTAT ATGCACTTTTCTATTCCCTCACTTTCATTTTCTAGTTTTC TACCCATCTACTCTATTGTATGACCCAAGACATTTTCATC AATAAATATTATGTTGTTCCAAACGAAATGTGTTTAATTG GATCATTTATCATCAAATTGATCCAACCTCCAGCAAAAAG AGGCTCCATATTAGGGCGTATCTTGAATGTTACCAACTTG GCGTGTATATATATATACATATATATATATATATATATAT ATATATGTTTTTGTGTGTGTATATATATATATATATAACA AACTAATATAGTTTTCCTTTTATTTTCTTTATTTTTTGTT GATCAATATTAATCCCAAAAGAATGTTGATTTGTGTTGAC TTGCAAACTAGATGACTCACGTTACAACCTTCGATCTAAA AGAAAGATGGCTGATGGAGAAGAATTTGATGATGCTGGAA ACATAATGATACCTATAAAAACACCAAAGGTTCTTGAAAT ATGACTCAAAATGACGAGAGAATGGATCACATGGCACAAG AATTGAAAACTGTAAGGGAGAAATTACGTCAAGTACGAGA CTTGGCCAAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)6ca(ta)13tgtttt(tg)4(ta)9 |
---|---|
PCR product (bp) | 257 |
fwd primer | emi02E03/U |
fwd primer seq. | cttgaatgttaccaacttggcgtg |
rev primer | emi02E03/L |
rev primer seq. | ccagcatcatcaaattcttctcca |
fluor. primer | emi02E03/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-attgaatgttaccaacttggcgtg |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 264 | 264 |
EPL-1 | 262 | 262 |
LS1151 (S.linneanum) | 250 | 250 |
LS1934 | 262 | 262 |
LS4021 (S. incanum) | 239 | 239 |
Nakate Shinkuro | 264 | 264 |
Senryo 2 | 262 | 262 |
Shironasu | 270 | 270 |
WCGR112-8 | 264 | 264 |
White Egg | 260 | 260 |
PI 286106 | 260 | 260 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_11 | 49.3 |
LW2010 | E_11 | 52.6 |
LWA2010 | LWA_11 | 50.304 |
LWAE2012 | E_11 | 55.185 |
LWF2_2022 | E_11 | 64.4 |
N28F2 | E_11 | 57.4 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | LE_HBa0085A11_T7_22677 Chromat_file:LE_HBa_085_A11-T7 SGN_GSS_ID:22677 (vector and quality trimmed) | 2e-10 |
TomatoBAC_end | BLASTN | SL_EcoRI0021K11_T7_229105 Chromat_file:SL_EcoRI_021_K11-T7 SGN_GSS_ID:245931 (vector and quality trimmed) | 6e-10 |
TomatoBAC_end | BLASTN | SL_MboI0013J03_T7_212175 Chromat_file:SL_MboI_13_J03-T7 SGN_GSS_ID:229001 (vector and quality trimmed) | 6e-10 |
TomatoBAC_end | BLASTN | LE_HBa0105G05_SP6_68264 Chromat_file:LE_HBa_105_G05-SP6 SGN_GSS_ID:68264 (vector and quality trimmed) | 6e-10 |
TomatoBAC_end | BLASTN | LE_HBa0105F05_SP6_68216 Chromat_file:LE_HBa_105_F05-SP6 SGN_GSS_ID:68216 (vector and quality trimmed) | 6e-10 |
EST Name | Species | Strain |
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