Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_11 |
Marker Type | SSR |
Map Position | 52.1 |
Annotation | |
Source Name | emi02C21 |
Source Type | genomic |
Source Sequence | CTATTCATTCAAGATTCCCTTTCAACCTAACATATACCAA TACATATACAAGCTTGACTTCATGTTTATGGTAAAGTTCC AACAAGTATTTCATTGATTTTAGGACAGAGCAAAGTTCTT GAATTGATGATTGTGAGGAGAAGAATCAGAGGATCATGTC TTATTTGGATTCAAGAACACACACACACACACACACACAC ACATATATATATTGTCGCTATTTTTTTTCTTGATTAATAT TTTTCAGGAACAAAACTTAGTCGCGTACAGTTATTTATAC TTGTGTAAGCATGATTCTAAATACATCTACAAAAATAATC ATGCTAGTTAACCTTTTCTTGTAACTATGTAGCAAAAATT TAGATTATATTATAATTTGCTACAAATATTTAATTTTCTA GAACATTTGCACATACAACAAATATAAAGGTATTATTCTA TAAAAACAATTTAGAAAATAAAATTTCATTAAATATCTAA ATTTAGAAAAATAGGTTGAGATTATAGTGGAGCTATCCTA CCACTTAAAGTATGAATTTTTGGGAACTAATGACACTCTT CCTGTGATTGTGGCTGCAGATCTTCAGGAAGACCAGGTGA GAGCATTGCTAGAGGTCCTCCTAAAGTTCAAACAAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ac)13a(ta)4 |
---|---|
PCR product (bp) | 134 |
fwd primer | emi02C21/U |
fwd primer seq. | tgtgaggagaagaatcagaggatca |
rev primer | emi02C21/L |
rev primer seq. | cgcgactaagttttgttcctgaaa |
fluor. primer | emi02C21/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-agtgaggagaagaatcagaggatca |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 138 | 138 |
EPL-1 | 137 | 137 |
LS1151 (S.linneanum) | 128 | 128 |
LS1934 | 134 | 134 |
LS4021 (S. incanum) | 127 | 127 |
Nakate Shinkuro | 137 | 137 |
Senryo 2 | 137 | 137 |
Shironasu | 136 | 136 |
WCGR112-8 | 134 | 134 |
White Egg | 134 | 134 |
PI 286106 | 136 | 136 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_11 | 52.1 |
ALF2 | AL11 | 62.7 |
EW2009 | LG01 | 45.8 |
LWA2010 | LWA_11 | 53.034 |
LWAE2012 | E_11 | 51.7 |
N28F2 | E_11 | 64.0 |
NAF2 | NA11 | 73.1 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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