Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_11 |
Marker Type | SSR |
Map Position | 48.4 |
Annotation | |
Source Name | emi01H05 |
Source Type | genomic |
Source Sequence | NAGTATCAAAAACTGTAAAGAACTAGACTAAGTTACCAGG TCATCAGCAATTTTTCATACCTTTACACTTACGAACTTTA GACGCACAAAAGGCAAAATATGAATAATTTCTTACATAAC TTCTCAGTCAAATTCTACAAACATACAACCAAATTAACAT GATCCAACCATACCACAACGTGTCTCTTGACAAATGGAAT AATTTAGACACAAATTTCACTTAATTCCATTGAGAAATGA CTGAGATCGCAATGTAAAATTTTCACTCATTTTTTATATA CAACCAGTGAAAAAGTAGTGGTTATACCTTGAAATACATG TTGAATCCTGAATCTGACTTCATTGCGGCATTTCTTTTGA AAATTCAAGTCACTTAGACCTTTGAATCACCCAAACCTGA TAAGAAATGCTCTCAAAATTTCCATGTAAAATTGGAGAAA ACATGTATATATATATATATATAGATATAATCTTCTGGAA ACATGTATATATACAGCCAGCTGCTCCCTTTTGCCACCTC AATGCCACATGGCAACACTAGGTCGTGCCATATGGCATCC CCAAGACATGCCACATCACTCCCCTTTTCCCTAACCTTTC AATCTCTTTTTTTTGCTGTTTCGGATTTTTTTGGACTCTT ATTTTTGCAATTGAACTATGTAATCATATGGATTTTGACA TTTCGGATCCAACAGTACAATCATAATTTCCAACGGAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)9gatataatcttctggaaacatg(ta)4 |
---|---|
PCR product (bp) | 266 |
fwd primer | emi01H05/U |
fwd primer seq. | atctgacttcattgcggcatttct |
rev primer | emi01H05/L |
rev primer seq. | aggttagggaaaaggggagtgatg |
fluor. primer | emi01H05/U_NED |
dye | NED |
fluor. Primer seq. | NED-atctgacttcattgcggcatttct |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 270 | 270 |
EPL-1 | 267 | 267 |
LS1151 (S.linneanum) | 268 | 268 |
LS1934 | 268 | 268 |
LS4021 (S. incanum) | 257 | 257 |
Nakate Shinkuro | 268 | 268 |
Senryo 2 | 268 | 268 |
Shironasu | 268 | 268 |
WCGR112-8 | 268 | 268 |
White Egg | 267 | 267 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_11 | 48.4 |
ALF2 | AL11 | 57.3 |
LWA2010 | LWA_11 | 49.384 |
LWAE2012 | E_11 | 62.19 |
NAF2 | NA11 | 66.9 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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