Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_02 |
Marker Type | SSR |
Map Position | 6.9 |
Annotation | |
Source Name | emh21J05 |
Source Type | genomic |
Source Sequence | CATTCAACATCAGCATGTAAATAGTTAAAACAAGTGTAAT ATTCCAGAATCTAGCAATCAGAAATTAGCTAGTCCATCTT TCTGGACCCATACAGCATAATTAATTTTTGTTTGTTTGTG CATGGAAATAAATGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAG AGAGACCGCATTGTCTGAAGTCCAAAGGGTAAGATTGTCT CGGAGAAGTTGCATGATCAATGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tg)23(ag)13 |
---|---|
PCR product (bp) | 196 |
fwd primer | emh21J05/U |
fwd primer seq. | gctagtccatctttctggacccat |
rev primer | emh21J05/L |
rev primer seq. | acattgatcatgcaacttctccga |
fluor. primer | emh21J05/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-actagtccatctttctggacccat |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 207 | 207 |
EPL-1 | 207 | 207 |
LS1151 (S.linneanum) | 192 | 192 |
LS1934 | 194 | 194 |
LS4021 (S. incanum) | 176 | 176 |
Nakate Shinkuro | 194 | 194 |
Senryo 2 | 205 | 205 |
Shironasu | 207 | 207 |
WCGR112-8 | 206 | 206 |
White Egg | 194 | 194 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_02 | 6.9 |
ALF2 | AL02 | 8.4 |
LW2010 | E_02 | 5.9 |
LWA2010 | LWA_02 | 6.827 |
LWAE2012 | E_02 | 7.293 |
LWF2_2022 | E_02 | 18.3 |
NAF2 | NA02.1 | 16.8 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | LE_HBa0032C06_T7_140256 Chromat_file:LE_HBa_032_C06-T7 SGN_GSS_ID:157087 (vector and quality trimmed) | 4e-08 |
EST Name | Species | Strain |
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