+Marker Data: emh21G04

Crop eggplant
Population AL2010
Linkage Group E_06
Marker Type SSR
Map Position 42.4
Annotation
Source Name emh21G04
Source Type genomic
Source Sequence NNACCAAAAACTTAATATAGCAGCAACCACCAGGAACACA TAAATATATAACTTCATTCATTTCATGGCCACACATCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCC CCAACTCTTTTCTAAAGTTAGTTCCTACAAAATGATCTGG TGATGACGTTCACATGAAGGAGGAGCTCGCAAGTNNNNNN NNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNN
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ta)3acttcattcatttcatggc(ca)3(tc)22
PCR product (bp) 162
fwd primer emh21G04/U
fwd primer seq. cagcaaccaccaggaacacataaa
rev primer emh21G04/L
rev primer seq. ctccttcatgtgaacgtcatcacc
fluor. primer emh21G04/U_VIC
dye VIC
fluor. Primer seq. VIC-atgcaaccaccaggaacacataaa
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 161 161
EPL-1 164 164
LS1151 (S.linneanum) 181 181
LS1934 157 157
LS4021 (S. incanum) 193 193
Nakate Shinkuro 163 163
Senryo 2 163 163
Shironasu 155 155
WCGR112-8 161 161
White Egg 157 157
PI 286106 159 159

Population Linkage Group Position
AL2010 E_06 42.4
ALF2 AL06 47.1
EW2009 LG04 50.4
LW2010 E_06 37.9
LWA2010 LWA_06 39.983
LWAE2012 E_06 46.593
LWF2_2022 E_06 44.2
N28F2 E_06 66.3
NAF2 NA06 43.2

DB Program Definition E-Value

EST Name Species Strain