Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_10 |
Marker Type | SSR |
Map Position | 50.9 |
Annotation | |
Source Name | emh11L01 |
Source Type | genomic |
Source Sequence | ACCCTCCCGGGGTGTGACAGTCAATCCCCCTTTTAAAAAA AAGGTGATATCACGCACCAATCCTTGATTGCCATGTGTGT GTGTGTGTGTGTGTGTGTGTATATATATATATATATATAT ATATATATATATATATACTAGTTTTAGTCTATATGCTTTG CACGTATGGGTGTGCAAAAGCCGAACCGACCGATAAATCG AACCAATAAAAACGTTATTGATTTATTGTTATTCGGTTAT TAGGTTATCGAATTTTTAATGGTTTTAGAAAAAAGATTTT TGGATTATCGGTTCGATATCAATTTTTACTATTGGGTAAA CCGATAACCCAATAAGATTATAATAATTTACTATTTTATC CCTTCGTATTAAATATTAATAATTTAATAGTAATAGGACA TTATTGCAATACTTTATATATTTTAATATTTACGGTACAA TGATTCGGGAAATAAGATTTTCCTTTTCTTAAAATTAAAA CCGAAAAAAAAAAAATACACCCCCTTCTTTCTTACCGAGA ATTTCCGAAAAAGACTAATTTATTTTTACGACGGGTTCTG TATTTCTATATTTTGTATATAATTGTATATAAGATATTTT GTATATAATCTATAAGAGAAGTCTTTTCCCTTTACTATTA TATGGTAAATGAGACCAAAAAGACGAAATGAGCAGAAATT TGTATATATCAATGGAGGAAATAAGCATGTGGAAAACAAG ACAGGAATTCTCTACAATTACACTGTGGAACAATTGAAGG GATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACTT CTTATGGCTAGATGTTGTTTGGTTCTGCTAATAATTATAT GTACATAATCACTTTTGGGTTCCTACTTGGGTGTGAATTC ATATTTGGGTGTTGTTGGGGCAAATTATTTCCTCAAGAAT TTCATTCTTGGCCAATAAGAAAAGCTTCTGCTAGCAAGGC CA |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tg)13(ta)19 |
---|---|
PCR product (bp) | 165 |
fwd primer | emh11L01/U |
fwd primer seq. | tgatatcacgcaccaatccttga |
rev primer | emh11L01/L |
rev primer seq. | ttattggttcgatttatcggtcgg |
fluor. primer | emh11L01/U_PET |
dye | PET |
fluor. Primer seq. | PET-agatatcacgcaccaatccttga |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 178 | 178 |
EPL-1 | 172 | 172 |
LS1151 (S.linneanum) | 134 | 134 |
LS1934 | 180 | 180 |
LS4021 (S. incanum) | 124 | 124 |
Nakate Shinkuro | 174 | 174 |
Senryo 2 | 172 | 172 |
Shironasu | 151 | 151 |
WCGR112-8 | 172 | 172 |
White Egg | 152 | 152 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_10 | 50.9 |
LWA2010 | LWA_10 | 48.891 |
LWAE2012 | E_10 | 54.031 |
NAF2 | NA10 | 39.7 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | LE_HBa0126C20_T7_97287 Chromat_file:LE_HBa_126_C20-T7 SGN_GSS_ID:97287 (vector and quality trimmed) | 6e-10 |
TomatoBAC_end | BLASTN | LE_HBa0094K05_SP6_27752 Chromat_file:LE_HBa_094_K05-SP6 SGN_GSS_ID:27752 (vector and quality trimmed) | 2e-09 |
TomatoBAC_end | BLASTN | SL_EcoRI0012L24_SP6_291739 Chromat_file:SL_EcoRI_012_L24-SP6 SGN_GSS_ID:308565 (vector and quality trimmed) | 9e-09 |
TomatoBAC_end | BLASTN | LE_HBa0091G15_T7_95165 Chromat_file:LE_HBa_091_G15-T7 SGN_GSS_ID:95165 (vector and quality trimmed) | 4e-08 |
TomatoBAC_end | BLASTN | LE_HBa0224P07_T7_377425 Chromat_file:LE_HBa_224_P07-T7 SGN_GSS_ID:394636 (vector and quality trimmed) | 6e-07 |
EST Name | Species | Strain |
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