+Marker Data: emh11L01

Crop eggplant
Population AL2010
Linkage Group E_10
Marker Type SSR
Map Position 50.9
Annotation
Source Name emh11L01
Source Type genomic
Source Sequence ACCCTCCCGGGGTGTGACAGTCAATCCCCCTTTTAAAAAA AAGGTGATATCACGCACCAATCCTTGATTGCCATGTGTGT GTGTGTGTGTGTGTGTGTGTATATATATATATATATATAT ATATATATATATATATACTAGTTTTAGTCTATATGCTTTG CACGTATGGGTGTGCAAAAGCCGAACCGACCGATAAATCG AACCAATAAAAACGTTATTGATTTATTGTTATTCGGTTAT TAGGTTATCGAATTTTTAATGGTTTTAGAAAAAAGATTTT TGGATTATCGGTTCGATATCAATTTTTACTATTGGGTAAA CCGATAACCCAATAAGATTATAATAATTTACTATTTTATC CCTTCGTATTAAATATTAATAATTTAATAGTAATAGGACA TTATTGCAATACTTTATATATTTTAATATTTACGGTACAA TGATTCGGGAAATAAGATTTTCCTTTTCTTAAAATTAAAA CCGAAAAAAAAAAAATACACCCCCTTCTTTCTTACCGAGA ATTTCCGAAAAAGACTAATTTATTTTTACGACGGGTTCTG TATTTCTATATTTTGTATATAATTGTATATAAGATATTTT GTATATAATCTATAAGAGAAGTCTTTTCCCTTTACTATTA TATGGTAAATGAGACCAAAAAGACGAAATGAGCAGAAATT TGTATATATCAATGGAGGAAATAAGCATGTGGAAAACAAG ACAGGAATTCTCTACAATTACACTGTGGAACAATTGAAGG GATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACTT CTTATGGCTAGATGTTGTTTGGTTCTGCTAATAATTATAT GTACATAATCACTTTTGGGTTCCTACTTGGGTGTGAATTC ATATTTGGGTGTTGTTGGGGCAAATTATTTCCTCAAGAAT TTCATTCTTGGCCAATAAGAAAAGCTTCTGCTAGCAAGGC CA
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (tg)13(ta)19
PCR product (bp) 165
fwd primer emh11L01/U
fwd primer seq. tgatatcacgcaccaatccttga
rev primer emh11L01/L
rev primer seq. ttattggttcgatttatcggtcgg
fluor. primer emh11L01/U_PET
dye PET
fluor. Primer seq. PET-agatatcacgcaccaatccttga
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 178 178
EPL-1 172 172
LS1151 (S.linneanum) 134 134
LS1934 180 180
LS4021 (S. incanum) 124 124
Nakate Shinkuro 174 174
Senryo 2 172 172
Shironasu 151 151
WCGR112-8 172 172
White Egg 152 152

Population Linkage Group Position
AL2010 E_10 50.9
LWA2010 LWA_10 48.891
LWAE2012 E_10 54.031
NAF2 NA10 39.7

DB Program Definition E-Value
TomatoBAC_end BLASTN LE_HBa0126C20_T7_97287 Chromat_file:LE_HBa_126_C20-T7 SGN_GSS_ID:97287 (vector and quality trimmed) 6e-10
TomatoBAC_end BLASTN LE_HBa0094K05_SP6_27752 Chromat_file:LE_HBa_094_K05-SP6 SGN_GSS_ID:27752 (vector and quality trimmed) 2e-09
TomatoBAC_end BLASTN SL_EcoRI0012L24_SP6_291739 Chromat_file:SL_EcoRI_012_L24-SP6 SGN_GSS_ID:308565 (vector and quality trimmed) 9e-09
TomatoBAC_end BLASTN LE_HBa0091G15_T7_95165 Chromat_file:LE_HBa_091_G15-T7 SGN_GSS_ID:95165 (vector and quality trimmed) 4e-08
TomatoBAC_end BLASTN LE_HBa0224P07_T7_377425 Chromat_file:LE_HBa_224_P07-T7 SGN_GSS_ID:394636 (vector and quality trimmed) 6e-07

EST Name Species Strain