Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_11 |
Marker Type | SSR |
Map Position | 48.9 |
Annotation | |
Source Name | emh11J22 |
Source Type | genomic |
Source Sequence | TGTTCTTGCTGTTGTTATTGCTTATTTGGATTAAAATTAA ATTATTTTTTAAATTGTAGGTGGGCAGCATATACTGCAGG TTTTTGGTGTAAAAAGTACCAAACTTAAGAGGAGGATATT TCAGTCTTTTCATACTTTCAGTTAGGTTATTAGAATCTGT TAGAAGTGGTTAAGTTGTCAACTAATAGGTGGTTGGTAAG GATTAACTTATAAGAGGTGATTACACTGTGACACATTCAT TCATTCATGGTTATTAAAAAATAAAAAACATTCATTCATT CATACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCGTTCTAAATCTCT TCTTAGGTCTTACAGCTTGTGCTTGTCAATCAGCACATTA CGCAAAATAACTGAAAACCTATACAGTTAGCTTAAATATA TGAAAAAACAAACACATAACTTAAGTTTTAAAACCCATAG AAAATTTGACAAAGATGCAAAATGCAGTTTTAAGATTCTA ATACAGGTTAAATGACTAGTTATCTTATATTAATTTTTTC TTAAAGAGAGATCTCTGAGATTAAATTTTTGAATTGTTCT ACCCAATAATTCATTCATAATGTTTCCTTAACAATTAATA TATCTCTTTGTCCATTATACTTATCGTTTACCGCCACTTT CTTCAAGATAGAGCCTATTAGCTATGAGGTAAACACTTTA GCACTTCAATACTGGAACGGGTGCAACCTAAGTGAGGGAA AGCACCTGCCCGGAGTTCACCTAGCTTCAAGGTTTAAGCT CATCTTAGATGAGCCTTTAGCAACACAAAGAATTAAGAAC AAAAACACAATGCTCATGGTCAAATGATTTTTCTAAAAGC AACTTGCATATTAATCCCACACACCTTTGACTTCTTCTTA GATCAAGGCACTTACAATCAAAACGACATCTATAATTTGT CTCCCATGGACAAAGGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)30 |
---|---|
PCR product (bp) | 180 |
fwd primer | emh11J22/U |
fwd primer seq. | ctgtgacacattcattcattcatgg |
rev primer | emh11J22/L |
rev primer seq. | ttgcgtaatgtgctgattgacaag |
fluor. primer | emh11J22/U_NED |
dye | NED |
fluor. Primer seq. | NED-atgtgacacattcattcattcatgg |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 193 | 193 |
EPL-1 | 191 | 191 |
LS1151 (S.linneanum) | 189 | 189 |
LS1934 | 191 | 191 |
LS4021 (S. incanum) | 197 | 197 |
Nakate Shinkuro | 191 | 191 |
Senryo 2 | 191 | 191 |
Shironasu | 191 | 191 |
WCGR112-8 | 191 | 191 |
White Egg | 189 | 189 |
PI 286106 | 168 | 168 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_11 | 48.9 |
ALF2 | AL11 | 57.7 |
LWA2010 | LWA_11 | 49.899 |
LWAE2012 | E_11 | 55.74 |
N28F2 | E_11 | 54.7 |
NAF2 | NA11 | 66.9 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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