Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_08 |
Marker Type | SSR |
Map Position | 43.6 |
Annotation | |
Source Name | emh11J10 |
Source Type | genomic |
Source Sequence | ACATATAAGTTACCAATTTTGAATCCACACCCAAGGTCCA CAACTTACTTAAACGAATAAACTTTCATGTTTTTCCTTCA TTATAACACTTACTAACTCACATACAATCTTTAATTTTGC TCAAAAGAAGAGAAAAATACATTTACCTTCACAACCCTTC CACAACTTTAAATCTTAAATTCTGAATTTCTGAGCATTTT CCCGACAAATCAATGCTTCTATGATGCTTAGAGGATCCAA TATAACAAGCTAGTAGCATCAAATCGGAAGAATAAGCAAA AAAATTGATTTTTTTCCTTTTTACTGTAGCAACCCGAAAG GGTTGCTACAATGTTTTCAGGATGTTTCTTTTTTCTAAGT GTGGGAAGCTTTGTTTTGTTCTTGAACAATATAACATGCT TACACACACACACACACACACACACATATATAGATAGAAA GGGAGAAAGGGTCTTGTGGAACATATCATACATGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ac)12a(ta)3 |
---|---|
PCR product (bp) | 280 |
fwd primer | emh11J10/U |
fwd primer seq. | tgaatttctgagcattttcccgac |
rev primer | emh11J10/L |
rev primer seq. | gttccacaagaccctttctccctt |
fluor. primer | emh11J10/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-agaatttctgagcattttcccgac |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 274 | 274 |
EPL-1 | 277 | 277 |
LS1151 (S.linneanum) | ||
LS1934 | 277 | 277 |
LS4021 (S. incanum) | 272 | 272 |
Nakate Shinkuro | 276 | 276 |
Senryo 2 | 276 | 276 |
Shironasu | 273 | 273 |
WCGR112-8 | 277 | 277 |
White Egg | 276 | 276 |
PI 286106 | 275 | 275 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_08 | 43.6 |
ALF2 | AL08 | 54.7 |
LWA2010 | LWA_08 | 46.174 |
LWAE2012 | E_08 | 46.885 |
N28F2 | E_06 | 47.8 |
NAF2 | NA08 | 67.8 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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