Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_07 |
Marker Type | SSR |
Map Position | 32.0 |
Annotation | |
Source Name | emh11H03 |
Source Type | genomic |
Source Sequence | ACCAGTGACCAATATATGGGTTAGCCTAGCCCGGTAAGAA AAAGTTGTTTTCAGGTTTTAGTAGATTCTTTGTTATGTTT TTCAAATTTTGAGTTTCAACTTTCATGTAATTGTAGTTTC AACTCTTTCATATTTATTGAAGTTTGTGGTTTTCCTTTTC TTCAAATTTGGGTATCCGCATTTATTGTTCAAATTACAAT TTACCATTAATAATTTTACAGCAAAATATATTTAACACAA CAAAGAGGGGCGACCGGGTATGAACCAGCCTGAAATTGTC CATGTAAATGAGTTAGGGACCCCATGTTCATGCTCTACCT CTCTATAAAATAATTGGACCCATGCAGACCATTTTAACTA CTGAATTTGTTTGCCAATGGCCATTGTCCCATGCAACTTA AAGCAGTAACTACCTCAGCCTGTCCCCCTGATCCATTTTA AGTGCCGGTCTGGCTTGTTTGATATGAATAGCTGTATGTA AGTATGCATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGCTAATGG AAAAGGAATAAGTGCTTTCATAGATTTCTGTTGTATTCAA GAATTTAATAAAGTATTTTGATTTATAAACTTCTTCCCCC GT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)30 |
---|---|
PCR product (bp) | 170 |
fwd primer | emh11H03/U |
fwd primer seq. | gtaactacctcagcctgtccccct |
rev primer | emh11H03/L |
rev primer seq. | gcacttattccttttccattagctc |
fluor. primer | emh11H03/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-ataactacctcagcctgtccccct |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 180 | 180 |
EPL-1 | 178 | 178 |
LS1151 (S.linneanum) | 157 | 157 |
LS1934 | 174 | 174 |
LS4021 (S. incanum) | 140 | 140 |
Nakate Shinkuro | 178 | 178 |
Senryo 2 | 178 | 178 |
Shironasu | 176 | 176 |
WCGR112-8 | 147 | 147 |
White Egg | 180 | 180 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_07 | 32.0 |
ALF2 | AL07 | 46.6 |
EW2009 | LG02 | 25.2 |
LW2010 | E_07 | 54.5 |
LWA2010 | LWA_07 | 55.142 |
LWAE2012 | E_07 | 51.144 |
LWF2_2022 | E_07 | 58.7 |
NAF2 | NA07 | 68.7 |
DB | Program | Definition | E-Value |
---|
EST Name | Species | Strain |
---|