+Marker Data: emh11G06

Crop eggplant
Population AL2010
Linkage Group E_10
Marker Type SSR
Map Position 80.9
Annotation
Source Name emh11G06
Source Type genomic
Source Sequence ATTTCCTAATTTATCTCATAGCCTCGCACTCAAGATAGTG GTGTTGTTCATGGAGGCTTTGATTTTGGGAGAGGAATGGA GGTGAAACGTCACTCTTGGATTTTGCCAAAGCCTTTGATT TAGTTATTGCTAACTCATGTTTCCTAAAGTGGTATATATA TATATATATATATATATATGTGTGTGTGTATGTGTGTGTG TGTGTGTATGTGTAGAAAATTACTAGAATGTAGATATAAT CATCACTTAGCATCAGGCCTCTAAGGGTCACAACCTCACA ACTATTCTGCAATACAACAATTCATAACCTTCACAATTAC AACTATCCACTTAATTACCTTTTGTAGTACAACCTCCACT TAACCAGTTTGGTTGATTAGACAAGCAGAAATCAACTGAA TCCTGTTAATTAATCTCTTCTTCCATTTCTTTACTACTTT GATCAAATCAGTAACAACTAAGCTAGTTCTAAAATTGGCC ACCGTTAAAAAGCAATCAAAACAAAGAGAATTAATTAATA CATGCATTCACAATTTTAAAGAATTATGAGTTATCGAGTT TTACCTTATTTGTTCTTCATGGTTCCCACAACTCTAGTTG TGGATTTAGCTATGCATATTCATTATAGATGCAAAAATCA TGATATGGAATAACATAATGAAGCACTTATAAAGATGAAT TTATGAACAAGAAATTCCAAACTCTTCACAAAAAATCACA AAGTATTGATTAAAATCACAAAGTTGTGTTCCAAGTGTTT CTATGCAGTTCTCTCTTTGTTTCTGGTCGTTCTCCTTCAT TCTCTACCAAAAATAATATAAAAAACACATTTATAATAAC TAAAATACATGTCCAAAAAGAATACGAAAATTGGATTCGG CAAGTAATATGGGCAGGGCTACAGGTCGT
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ta)13(tg)5ta(tg)8
PCR product (bp) 197
fwd primer emh11G06/U
fwd primer seq. ggaggtgaaacgtcactcttggat
rev primer emh11G06/L
rev primer seq. gttgtgacccttagaggcctgatg
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 200 200
EPL-1 202 202
LS1151 (S.linneanum)
LS1934 202 202
LS4021 (S. incanum)
Nakate Shinkuro 202 202
Senryo 2 200 200
Shironasu 192 192
WCGR112-8 202 202
White Egg 206 206

Population Linkage Group Position
AL2010 E_10 80.9
ALF2 AL10 92.7
LWA2010 LWA_10 67.567
LWAE2012 E_10 72.516

DB Program Definition E-Value
TomatoBAC_end BLASTN LE_HBa0101K20_SP6_56966 Chromat_file:LE_HBa_101_K20-SP6 SGN_GSS_ID:56966 (vector and quality trimmed) 1e-07
TomatoBAC_end BLASTN SL_MboI0119I14_SP6_208322 Chromat_file:SL_MboI_119_I14-SP6 SGN_GSS_ID:225148 (vector and quality trimmed) 5e-07
TomatoBAC_end BLASTN SL_MboI0064I06_T7_164922 Chromat_file:SL_MboI_64_I06-T7 SGN_GSS_ID:181748 (vector and quality trimmed) 5e-07
TomatoBAC_end BLASTN LE_HBa0055M04_T7_82375 Chromat_file:LE_HBa_055_M04-T7 SGN_GSS_ID:82375 (vector and quality trimmed) 5e-07
TomatoBAC_end BLASTN SL_EcoRI0003F12_T7_387390 Chromat_file:SL_EcoRI_003_F12-T7 SGN_GSS_ID:404584 (vector and quality trimmed) 2e-06

EST Name Species Strain