Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_10 |
Marker Type | SSR |
Map Position | 80.9 |
Annotation | |
Source Name | emh11G06 |
Source Type | genomic |
Source Sequence | ATTTCCTAATTTATCTCATAGCCTCGCACTCAAGATAGTG GTGTTGTTCATGGAGGCTTTGATTTTGGGAGAGGAATGGA GGTGAAACGTCACTCTTGGATTTTGCCAAAGCCTTTGATT TAGTTATTGCTAACTCATGTTTCCTAAAGTGGTATATATA TATATATATATATATATATGTGTGTGTGTATGTGTGTGTG TGTGTGTATGTGTAGAAAATTACTAGAATGTAGATATAAT CATCACTTAGCATCAGGCCTCTAAGGGTCACAACCTCACA ACTATTCTGCAATACAACAATTCATAACCTTCACAATTAC AACTATCCACTTAATTACCTTTTGTAGTACAACCTCCACT TAACCAGTTTGGTTGATTAGACAAGCAGAAATCAACTGAA TCCTGTTAATTAATCTCTTCTTCCATTTCTTTACTACTTT GATCAAATCAGTAACAACTAAGCTAGTTCTAAAATTGGCC ACCGTTAAAAAGCAATCAAAACAAAGAGAATTAATTAATA CATGCATTCACAATTTTAAAGAATTATGAGTTATCGAGTT TTACCTTATTTGTTCTTCATGGTTCCCACAACTCTAGTTG TGGATTTAGCTATGCATATTCATTATAGATGCAAAAATCA TGATATGGAATAACATAATGAAGCACTTATAAAGATGAAT TTATGAACAAGAAATTCCAAACTCTTCACAAAAAATCACA AAGTATTGATTAAAATCACAAAGTTGTGTTCCAAGTGTTT CTATGCAGTTCTCTCTTTGTTTCTGGTCGTTCTCCTTCAT TCTCTACCAAAAATAATATAAAAAACACATTTATAATAAC TAAAATACATGTCCAAAAAGAATACGAAAATTGGATTCGG CAAGTAATATGGGCAGGGCTACAGGTCGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)13(tg)5ta(tg)8 |
---|---|
PCR product (bp) | 197 |
fwd primer | emh11G06/U |
fwd primer seq. | ggaggtgaaacgtcactcttggat |
rev primer | emh11G06/L |
rev primer seq. | gttgtgacccttagaggcctgatg |
fluor. primer | |
dye | |
fluor. Primer seq. | |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 200 | 200 |
EPL-1 | 202 | 202 |
LS1151 (S.linneanum) | ||
LS1934 | 202 | 202 |
LS4021 (S. incanum) | ||
Nakate Shinkuro | 202 | 202 |
Senryo 2 | 200 | 200 |
Shironasu | 192 | 192 |
WCGR112-8 | 202 | 202 |
White Egg | 206 | 206 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_10 | 80.9 |
ALF2 | AL10 | 92.7 |
LWA2010 | LWA_10 | 67.567 |
LWAE2012 | E_10 | 72.516 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | LE_HBa0101K20_SP6_56966 Chromat_file:LE_HBa_101_K20-SP6 SGN_GSS_ID:56966 (vector and quality trimmed) | 1e-07 |
TomatoBAC_end | BLASTN | SL_MboI0119I14_SP6_208322 Chromat_file:SL_MboI_119_I14-SP6 SGN_GSS_ID:225148 (vector and quality trimmed) | 5e-07 |
TomatoBAC_end | BLASTN | SL_MboI0064I06_T7_164922 Chromat_file:SL_MboI_64_I06-T7 SGN_GSS_ID:181748 (vector and quality trimmed) | 5e-07 |
TomatoBAC_end | BLASTN | LE_HBa0055M04_T7_82375 Chromat_file:LE_HBa_055_M04-T7 SGN_GSS_ID:82375 (vector and quality trimmed) | 5e-07 |
TomatoBAC_end | BLASTN | SL_EcoRI0003F12_T7_387390 Chromat_file:SL_EcoRI_003_F12-T7 SGN_GSS_ID:404584 (vector and quality trimmed) | 2e-06 |
EST Name | Species | Strain |
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