Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_09 |
Marker Type | SSR |
Map Position | 52.0 |
Annotation | |
Source Name | emh11B19 |
Source Type | genomic |
Source Sequence | ACCTTGAAATCCATCACAAAAGCTCATAATAGTTCATAGT TTTATAGTTCAAAATATGCATAATCTCAATACACAAAATC AATTCATGAAGTAAGCTTGAAATAGACATTCCTACATGAT CAATCAATACTTTATAAAATCCCAACATAATTGTAATACA TCATCATAAAGGAAAAATATGTATTTTAGACTTTTTTATT TATCCTTCTTGTGTTTAAAAAGAAAAAGAAAAAATATGTC TTTTAGCTTTAGCCCATCTACCGGTAAAAAAAGGAGGTTG TTTGTTGAATCTTCAGCTTATACTCCCACTTAATTTGATA ACGAGTATAAACAAGAGCCAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGCTAGCAATTGTATCACAGC AACCAGGAACAGTGACCAAGAGGAGAAAAAAAATCAAAAG ATGTAAGTTCTAACTAAGGAGAGGAGCAAGGAAGGTAAGT CCTAAACCTAGTTGTAAACTTAATTTGTTTATTTCATAGC TATAGAATTGAGGTTAAGAGTTTAAGAAATCTCCATGGGT TAGAAGAAATAGAGAACAATTTGAAATTTGAGAAGATAAT CCTTTGAATTCTCTTTAAATTAGATGAATGAATGATATGA ATAGGAGAAGTTGATGAATTAGGAATTGTGAAAGTGGTGT AGTCCATATAAAAATCTCCAGAAGTGACTATTAAAAGGAC AACCTGGGAAGCTAGGGTTCGGCATCTTAGAAAAAAAGAT CGTAATCATCACAAACAGTGATTCACTCTAGTTTAGGGCT GATTAATTGATTCTTGCATAAGTTTAGACAAAGAATTGAG TAAATAATTATAAAAATATGCCAAAACGGATGGATTAAGA ACTAGTTGAATTATACATGGTTTGGATATTACATTATATG TCATTAAATGGATAGGAAATAGAAAAAAAAAATCCTAAAA GGGATTGGGAATTTCTAAAGTTAGTATGAACTTATCTTGA ACAAAGAAAGTAACATGAGATTTTATTATATGAAAATAGA TTGACCAAAGGAAGTATTACAGATTGCTTAAGATGACAAG TTTGGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)21 |
---|---|
PCR product (bp) | 187 |
fwd primer | emh11B19/U |
fwd primer seq. | tcttttagctttagcccatctaccg |
rev primer | emh11B19/L |
rev primer seq. | ctcctcttggtcactgttcctggt |
fluor. primer | emh11B19/U_PET |
dye | PET |
fluor. Primer seq. | PET-acttttagctttagcccatctaccg |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 189 | 189 |
EPL-1 | 189 | 189 |
LS1151 (S.linneanum) | 185 | 185 |
LS1934 | 189 | 191 |
LS4021 (S. incanum) | 196 | 196 |
Nakate Shinkuro | 187 | 187 |
Senryo 2 | 187 | 189 |
Shironasu | 189 | 189 |
WCGR112-8 | 189 | 189 |
White Egg | 189 | 189 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_09 | 52.0 |
ALF2 | AL09 | 69.6 |
LW2010 | E_09 | 58.8 |
LWA2010 | LWA_09 | 57.76 |
LWAE2012 | E_09 | 42.126 |
LWF2_2022 | E_09 | 65.8 |
NAF2 | NA09 | 54.4 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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