Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_09 |
Marker Type | SSR |
Map Position | 50.4 |
Annotation | |
Source Name | emh05E02 |
Source Type | genomic |
Source Sequence | CTATAAATTGTCATAATTTTTGTATTAGAAGCATAAATCA ATTTTGCTTCTTTCTATCTTCCATAGAGATGTGATACTTT TATAATCTTTTAACATTCTCAGTTAAATTCTATGTAATTA TTTAATCACTATATACGATCTGTGTCTCAGATTTCTATTG AATTATTTTCTCTCTTAAAAATGATTGTTTTCCTACTTGG GGAATACTTCATTTTGCAACTTTCCAGGTTAACTTTTTCT GTAATAACCCTTATATTTTTTAATGAAGGATTAATTGGGT AATTTTAACCATTAATAATTCTTATTAAAAGAATTTAAAA AAAAAGGGCCCAACCCCTTTTATTTTAATTCTCACGCAGT AAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAAGCACTAGTTCTCTTCAAATCAATC ACTACAGAGATAAAAAAAAAGGTTAGGCAGATTTTCATCC CTTTCTTTTGGAAGAAAACACGCGAATTATCAAGGTGATT CAGGAAACTCATACATAGAATCAATTTGATCTTTGAACCA CTAAATTAGGTGATAAACCATAGGTATTTTCTTCTTGTTG TGTACTTTTGTTAGTAGAAATATCTACCAGAATTTTCACC AACTAGGTTTAACAATAAGATTAAGAATACTTTTACTTAT AATTCATAGTCTAAGGTATTGTGTATTATGGTTTAACCCT AAAGTTAGGAATAGTAAGACTTGAGTTTGTCCAACATAAT TGATATCGGTAATCACTATTTTTCATAGATTGAGGCAAGT AAGGGCTATTTTGGTGGGTGTTCTACGCGTGCAAGGTTGT GAAACTTGTCATTAATAAGGTAAGTGAGACTTTAAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)24 |
---|---|
PCR product (bp) | 161 |
fwd primer | emh05E02/U |
fwd primer seq. | aagggcccaaccccttttatttta |
rev primer | emh05E02/L |
rev primer seq. | aaagggatgaaaatctgcctaacc |
fluor. primer | emh05E02/U_NED |
dye | NED |
fluor. Primer seq. | NED-atgggcccaaccccttttatttta |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 168 | 168 |
EPL-1 | 167 | 167 |
LS1151 (S.linneanum) | 142 | 142 |
LS1934 | 163 | 163 |
LS4021 (S. incanum) | 159 | 159 |
Nakate Shinkuro | 168 | 168 |
Senryo 2 | 169 | 169 |
Shironasu | 168 | 168 |
WCGR112-8 | 162 | 162 |
White Egg | 163 | 163 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_09 | 50.4 |
ALF2 | AL09 | 58.5 |
LW2010 | E_09 | 56.0 |
LWA2010 | LWA_09 | 56.183 |
LWAE2012 | E_09 | 41.196 |
LWF2_2022 | E_09 | 59.0 |
NAF2 | NA09 | 52.7 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_EcoRI0097M21_SP6_309800 Chromat_file:SL_EcoRI_097_M21-SP6 SGN_GSS_ID:326626 (vector and quality trimmed) | 6e-13 |
EST Name | Species | Strain |
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