+Marker Data: emh05B02

Crop eggplant
Population AL2010
Linkage Group E_01
Marker Type SSR
Map Position 51.6
Annotation
Source Name emh05B02
Source Type genomic
Source Sequence TCAATTATTGTGAAATATTATTCTTTTTGTAAATACTATT GTTACTTCTAGACTTCCTACAATTTATGCATAGACATAGT AATATACCAATATTAAGAAGGCAGCCTGCACAAGGAAAAA TAAATAGAACCAAAGACACGTTGGGATCATGCGTGAGTTT TGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGTAATATACCAATATTAAGAAAGCAGCCTGCA CAAAGAAAAATAAATAGAACGAAAGACTTGTTGGAGAGAG AGAGAGAGAGAGAGGGAAGGAGGGAGGGAGATGCTCTCCT AGAACCCAGTCAAAAGACAACCATCCGGCAG
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (ag)43
PCR product (bp) 238
fwd primer emh05B02/U
fwd primer seq. gaaccaaagacacgttgggatcat
rev primer emh05B02/L
rev primer seq. ttctaggagagcatctccctccct
fluor. primer emh05B02/U_PET
dye PET
fluor. Primer seq. PET-ataccaaagacacgttgggatcat
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 216 216
EPL-1 229 229
LS1151 (S.linneanum) 210 210
LS1934 258 258
LS4021 (S. incanum) 287 287
Nakate Shinkuro 233 233
Senryo 2 229 229
Shironasu 235 235
WCGR112-8 236 236
White Egg 240 240

Population Linkage Group Position
AL2010 E_01 51.6
EW2009 LG03 105.1
LW2010 E_01 49.0
LWA2010 LWA_01 43.533
LWAE2012 E_01 47.643
LWF2_2022 E_01 140.7

DB Program Definition E-Value

EST Name Species Strain