Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_03 |
Marker Type | SSR |
Map Position | 11.2 |
Annotation | |
Source Name | emh04G12 |
Source Type | genomic |
Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNAAATGATGGTGAAGAA TCTATTTGTATCAGTGACAGGACATGGCAGAATGCTTGAT GAATAAGAAGAAAAAAAAGGAAGAAATTGGGTTTGGCGGA GAAAGTGAAAACATTCAGTTCTTTTCCTTTTAGTTTGATT TTGAAATAATGATAAAAATTTAAATTTGAAATTAATTGAG AAATTTTTTTATTAGACAACTGAAAAATAGGTGGATCAGG ATGATATTGATTAGACTACTTAAACTTATGAGTGAGTTGA GAATAAATTAAAGAGGAGTGTGAAAGTATATACTACGTAT CTGAAAGATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGT AAAAATAAGAGATTTCTATCATTTTTTCAAACAATAGTGA TTATTAGAAATTATAGTAAAATAGATTGTCTAGTTGTGCA ATTTTTCCAAAACTATATTACCAGGGGAGGAAAGTTAATT AAACGTAAGAACAAAAAATTGAATTCATAGNNNNNNNNNN NNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNN |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)3ctacgtatctgaaagatgg(ag)14 |
---|---|
PCR product (bp) | 269 |
fwd primer | emh04G12/U |
fwd primer seq. | caactgaaaaataggtggatcaggatg |
rev primer | emh04G12/L |
rev primer seq. | cgtttaattaactttcctcccctgg |
fluor. primer | emh04G12/U_NED |
dye | NED |
fluor. Primer seq. | NED-atactgaaaaataggtggatcaggatg |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 268 | 268 |
EPL-1 | 266 | 266 |
LS1151 (S.linneanum) | 256 | 256 |
LS1934 | 260 | 260 |
LS4021 (S. incanum) | 249 | 249 |
Nakate Shinkuro | 266 | 266 |
Senryo 2 | 266 | 266 |
Shironasu | 266 | 266 |
WCGR112-8 | 266 | 266 |
White Egg | 264 | 264 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_03 | 11.2 |
ALF2 | AL03 | 4.7 |
LW2010 | E_03 | 38.0 |
LWA2010 | LWA_03 | 38.241 |
LWAE2012 | E_03 | 47.39 |
LWF2_2022 | E_03 | 40.8 |
NAF2 | NA03.1 | 37.2 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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