Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_07 |
Marker Type | SSR |
Map Position | 14.3 |
Annotation | |
Source Name | emh04B05 |
Source Type | genomic |
Source Sequence | AGATTAATGGGATTTTAGTTTGGGACCATCATAGAAACTC AAGGTAATGGTTATACATTTACCCATGAAAAGTATACATG ATTGTATTCAAAGTTTAGCCATTAAAGTAAGGAATTTGAT GGTGGAATTTGGGAGTTTTTGGTCAAAGATCAAGAAATGA TAAATTGATGATGAGTTGATAAACAAATTCAAAATAAAAA ATTAATAACAGATTTGGACTCGTGGGGCAATGGATAAACT GCATATGAGTTTTGTTCCAATGATTGACCCATGTGGGCTC GTGGTTGACATTTTTGTTGACTTTAACCTAGATCGCATAT TAAAATATAGAATTCAGTCAAGTATATTTTTTTAATAGAG TTGACCCCTTGGGAAGGCTCCGCAGGTGGAAAAGAGATAC AACCTGAAACAAAAAGGAAAAAACAAGTGTCCCAAAGAGC AAATGAATTCAATTGCTCTTGAATTGATCCCTCGAGAACC CTAAGACTTCTTACTGAGAAAAAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGACAGACAGACAGAGAGGA GAGAGGAGAGTTATTGACTTGTAATCACCAAAACAAAATG CTTACAGTTGCTATAGATTTCATCTATGTGCTGAATGACA CAGGAAAGGGCAAGTAAGTTACAATTAACTTTAGGAAAGG CCAACTAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)20acagacagac(ag)3g(ag)3 |
---|---|
PCR product (bp) | 195 |
fwd primer | emh04B05/U |
fwd primer seq. | gctcttgaattgatccctcgagaa |
rev primer | emh04B05/L |
rev primer seq. | cctttcctgtgtcattcagcacat |
fluor. primer | emh04B05/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-actcttgaattgatccctcgagaa |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 193 | 193 |
EPL-1 | 193 | 193 |
LS1151 (S.linneanum) | 197 | 197 |
LS1934 | 208 | 208 |
LS4021 (S. incanum) | 170 | 170 |
Nakate Shinkuro | 193 | 193 |
Senryo 2 | 193 | 193 |
Shironasu | 208 | 208 |
WCGR112-8 | 193 | 193 |
White Egg | 212 | 212 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_07 | 14.3 |
LW2010 | E_07 | 37.0 |
LWA2010 | LWA_07 | 37.684 |
LWAE2012 | E_07 | 31.567 |
LWF2_2022 | E_07 | 40.4 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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