Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_01 |
Marker Type | SSR |
Map Position | 51.1 |
Annotation | |
Source Name | emh03H10 |
Source Type | genomic |
Source Sequence | TGGCCTTGCTAGCAGAAGCCTTACCGGGTTTACTCGGTTT GCGGTTTGGTTTGGTTTGGTTCTGTTCACCAATTATCTAG CAAGAGAGATTGAGAGAGATGAGAGAGACGAGCGAGACCA AGAGAGGGAGGAGAGTGAGAGAGGGCAGAGAGACGAATTG TATATTTATATCTGATGAATTAACTATGTATATCTATTAA AATAATTATGTATATGCAGCTGGTATACCTATGTAATTAT ATTTGTGACAAGATACGTAGTTGTATATTTTTTTTTCTTT TATAAAGAGACTACTAGACCTGTAAAAAAAAGAAAATGAA AGCCACAGAACTCAAAGTACGAAAGTTAAAGTAATGTGTA TCAACTAAATGACTAAATTGCCCTCACTTTTCAATTTAAA GACAAATAACAGGCATGTTGAAAGTGCCTCTTAAGAGAAA AGAGAAAAGAAAAACGTTGAATT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)3attg(ag)3atg(ag)3acgagcgagacca(ag)3ggaggagagtg(ag)3ggc(ag)3 |
---|---|
PCR product (bp) | 299 |
fwd primer | emh03H10/U |
fwd primer seq. | ggtttggtttggtttggttctgtt |
rev primer | emh03H10/L |
rev primer seq. | cgtactttgagttctgtggctttca |
fluor. primer | emh03H10/U_PET |
dye | PET |
fluor. Primer seq. | PET-agtttggtttggtttggttctgtt |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 299 | 299 |
EPL-1 | 299 | 299 |
LS1151 (S.linneanum) | ||
LS1934 | 336 | 336 |
LS4021 (S. incanum) | 310 | 310 |
Nakate Shinkuro | 299 | 299 |
Senryo 2 | 299 | 299 |
Shironasu | 315 | 315 |
WCGR112-8 | 299 | 299 |
White Egg | 299 | 299 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_01 | 51.1 |
LWA2010 | LWA_01 | 42.983 |
LWAE2012 | E_01 | 46.907 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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