Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_02 |
Marker Type | SSR |
Map Position | 68.0 |
Annotation | |
Source Name | emh02E08 |
Source Type | genomic |
Source Sequence | TCCAAAGGGCATCGGCGTTCAGCAGAGAAGAAATTAAGTG ATAGAATTTGGGATGAATTGGTGAGTGATGATGAAGAGGA GGAGAGTGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAA GAGGAAGAGGAAGAGTGAAGAGGAAGGTGAAAAGGATGAA GAGTATTTTCCAGGATCCTTAACAAACTTTCAGATGCCAC TTAAGGAAGCATTGAATAATTTAAGAACTTCCACCAAGGG AAAAGTTCTTAGAAATGCATCTATGAGAAATAAAGGGAAT GATGAAGAGAAAGATGAGCCTTCCCAGTGCAAGGACAGGC TCAAAGTATCTCCCTCCACAAAAAGCGTTCTTCCGAGAGG AAATTCTCAGACAAAGAGGATGCCTGATAAAGTAAATCTA GGACTACGTGCAGGAACTTCAAGCAAGAAGATAACTCCTA AAGGAGATAGTACAATGAACAAGGTGGAATTTGGAAGTGA AGAAAAGCGGGGCATGTGCAAGAAAAAACCAAGTTTATCC AAGGGTGGGAAAAAAATGCCAGGGACTCGTATTCAATGCT CAGAGAATAAGAGGCGGGTGCCTTCTATATTAAATGGAGA ACAATGTCTGGGAATGCCAAGCAAGAAGAAGATTCCTCAA GGAGAGAGTACAATGGAGGTGGATGAAAGTGAAGACGAAT GGACTGTGTGCAAGGAAAAGCCAAGCTGTGGATATCATCA ACCCATATAATCTATGCTGTGCGCTAAATTGACCGGGAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tga)3a(gag)3agtgaagaggaagaggaagaggaagag(gaa)3 |
---|---|
PCR product (bp) | 199 |
fwd primer | emh02E08/U |
fwd primer seq. | cggcgttcagcagagaagaaatta |
rev primer | emh02E08/L |
rev primer seq. | tgcttccttaagtggcatctgaaa |
fluor. primer | emh02E08/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-aggcgttcagcagagaagaaatta |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 216 | 216 |
EPL-1 | 199 | 199 |
LS1151 (S.linneanum) | 199 | 199 |
LS1934 | 205 | 205 |
LS4021 (S. incanum) | 205 | 205 |
Nakate Shinkuro | 199 | 199 |
Senryo 2 | 199 | 199 |
Shironasu | 199 | 199 |
WCGR112-8 | 216 | 216 |
White Egg | 199 | 199 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_02 | 68.0 |
ALF2 | AL02 | 71.7 |
EW2009 | LG08 | 62.0 |
LW2010 | E_02 | 48.4 |
LWA2010 | LWA_02 | 51.384 |
LWAE2012 | E_02 | 51.777 |
LWF2_2022 | E_02 | 78.9 |
NAF2 | NA02.2 | 2.5 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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