Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_11 |
Marker Type | SSR |
Map Position | 47.2 |
Annotation | |
Source Name | emh02A04 |
Source Type | genomic |
Source Sequence | GATCTTCTTAGGAAAAATATATTTTGCTATTTTTAAATTT TGATTTCATTATTTTTATCTGCTCAATAGAGTCAACAGCA AAATATGATAGTGGATGTCCAGCAAAATCAAGCACAAACA TTTAGACAATCACAGGTACATTAATATTCATGAAATTAAA TATTATTCCTGGTTATATCATACCCCACATCACGTAATAA ACTAATTAAGTGATATATTTTGCAGACACAATTTACTTTT GGTCAAAGTAGTGACAACTCTATCAAGGACTTCTGGTACA ATATGTACAATTCTACCAGGTTAATTTCTTTCGATATTCA TCCTTTTAATTATTGCTTGCAAGATAATGGTTTATCCGTT TAGAAAAATGATGACAATATAATTATAACGATCAATGATT TTAATATGACAAAGTGTCATATACAATGAGTATATTTTAT TATTTATGTTAGTATAATTCTTGTTTATGATATGATTTCT AAGCGCACTCGCACTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTTCTGTCTCAGGCCTAACTCGAGTACTC CACTCACGATTACAGACCCAGAATTGAACAATCCCTCCAA TTGGAGTTGGAGTATACCCCTTTAG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)19 |
---|---|
PCR product (bp) | 126 |
fwd primer | emh02A04/U |
fwd primer seq. | tatgatttctaagcgcactcgcac |
rev primer | emh02A04/L |
rev primer seq. | agggattgttcaattctgggtctg |
fluor. primer | emh02A04/U_PET |
dye | PET |
fluor. Primer seq. | PET-attgatttctaagcgcactcgcac |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 130 | 130 |
EPL-1 | 130 | 130 |
LS1151 (S.linneanum) | 106 | 106 |
LS1934 | 126 | 126 |
LS4021 (S. incanum) | 118 | 118 |
Nakate Shinkuro | 118 | 124 |
Senryo 2 | 124 | 130 |
Shironasu | 128 | 128 |
WCGR112-8 | 126 | 126 |
White Egg | 128 | 128 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_11 | 47.2 |
ALF2 | AL11 | 55.4 |
EW2009 | LG01 | 61.6 |
LWA2010 | LWA_11 | 48.201 |
LWAE2012 | E_11 | 56.761 |
NAF2 | NA11 | 62.9 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_EcoRI0045M12_SP6_245773 Chromat_file:SL_EcoRI_045_M12-SP6 SGN_GSS_ID:262599 (vector and quality trimmed) | 9e-08 |
EST Name | Species | Strain |
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