Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_02 |
Marker Type | SSR |
Map Position | 0.7 |
Annotation | |
Source Name | emh01J03 |
Source Type | genomic |
Source Sequence | NNATTTCTTACAATCTAAAGACCAGAAGTTTTATATGATT TTTTAAATGTTGAAATATTTTATAATTATTTTCGTTTTGT CTTAAAGAATTTAGAAAGGTTGATCATAAAAAATTGAAAT AAAGGGAGTGACATCGCATTGGGCCTTTTTTAGTTTCGCC ATATACTGATCCCACTCTCTCTCTCTCGTTCTCTCTCGCT CTCTCTCTCTCTCTCACACAGACACACACACAGTTTTAAC TTTGTGTGTTGTCGAGCTATTTAACTTCCTATGTTGCATG ATATATTTTAAGCATTTGATTTAAAAGTGATCAGGTTAGT TCTTAACTCCGTNNNNNNNNNNNNNNNNNNNNNNNNANNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNN |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)6gt(tc)4gc(tc)8acacag(ac)5agttttaactt(tg)3 |
---|---|
PCR product (bp) | 163 |
fwd primer | emh01J03/U |
fwd primer seq. | tgaaataaagggagtgacatcgca |
rev primer | emh01J03/L |
rev primer seq. | gcaacataggaagttaaatagctcgac |
fluor. primer | emh01J03/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-agaaataaagggagtgacatcgca |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 171 | 171 |
EPL-1 | 171 | 171 |
LS1151 (S.linneanum) | 185 | 185 |
LS1934 | 171 | 171 |
LS4021 (S. incanum) | 188 | 188 |
Nakate Shinkuro | 171 | 171 |
Senryo 2 | 171 | 171 |
Shironasu | 171 | 171 |
WCGR112-8 | 173 | 173 |
White Egg | 171 | 171 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_02 | 0.7 |
EW2009 | LG08 | 6.0 |
LW2010 | E_02 | 2.0 |
LWA2010 | LWA_02 | 1.704 |
LWAE2012 | E_02 | 2.384 |
LWF2_2022 | E_02 | 13.2 |
DB | Program | Definition | E-Value |
---|
EST Name | Species | Strain |
---|