| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 51.6 |
| Annotation | |
| Source Name | emh01I23 |
| Source Type | genomic |
| Source Sequence | TAGGCCTTGCTAGCAGAAGCACTAATACACGTAATGTGTG GGGTGTTACACCATCCTAGCTAACTCTAGCTATGGATCAC GAGCAAGAGAAAAACACTCACAATCAAAGTATCAGGTTCT TTTATAGATCAGGACCTGATGTATATAAAAAGCTTAGAGA AATAAACTAAACACAGCAAAATGAGTTTCTGAGAATTCGA GAGTCATTGTTGTTCTTCAGTTGTATTTCTTGAAATATAG TTTTCTTTGTTGTGGAAGTGATAATCTATTCTGCCAAAAA TGTTTCATATATATGTCTCTGTGTATCTCTCTGTGTGTGT GTGTGTGTATATATATATATGTGTGTGTGTGTGTGTGTGT ATGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGA GAGAGAGAGAGAGAGCACATGTTATAGGGCAACTACCTTG TTGGACCACCTATACTAATTGGAGCAATTCTACTAGCCAA AAGGCCTGCCACACTGCAATACTCGAGCACTGACAGAAGT TTGTTACTGGCAGTGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3tgtctctgtgta(tc)3(tg)8(ta)6(tg)10ta(tg)13(ag)14 |
|---|---|
| PCR product (bp) | 294 |
| fwd primer | emh01I23/U |
| fwd primer seq. | tcgagagtcattgttgttcttcagttg |
| rev primer | emh01I23/L |
| rev primer seq. | ggcaggccttttggctagtagaat |
| fluor. primer | emh01I23/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-acgagagtcattgttgttcttcagttg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 307 | 307 |
| EPL-1 | 302 | 302 |
| LS1151 (S.linneanum) | 289 | 289 |
| LS1934 | 302 | 302 |
| LS4021 (S. incanum) | 277 | 277 |
| Nakate Shinkuro | 304 | 304 |
| Senryo 2 | 302 | 304 |
| Shironasu | 305 | 305 |
| WCGR112-8 | 303 | 303 |
| White Egg | 304 | 304 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 51.6 |
| LWA2010 | LWA_05 | 44.824 |
| LWAE2012 | E_05 | 46.084 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
