Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_05 |
Marker Type | SSR |
Map Position | 51.6 |
Annotation | |
Source Name | emh01I23 |
Source Type | genomic |
Source Sequence | TAGGCCTTGCTAGCAGAAGCACTAATACACGTAATGTGTG GGGTGTTACACCATCCTAGCTAACTCTAGCTATGGATCAC GAGCAAGAGAAAAACACTCACAATCAAAGTATCAGGTTCT TTTATAGATCAGGACCTGATGTATATAAAAAGCTTAGAGA AATAAACTAAACACAGCAAAATGAGTTTCTGAGAATTCGA GAGTCATTGTTGTTCTTCAGTTGTATTTCTTGAAATATAG TTTTCTTTGTTGTGGAAGTGATAATCTATTCTGCCAAAAA TGTTTCATATATATGTCTCTGTGTATCTCTCTGTGTGTGT GTGTGTGTATATATATATATGTGTGTGTGTGTGTGTGTGT ATGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGA GAGAGAGAGAGAGAGCACATGTTATAGGGCAACTACCTTG TTGGACCACCTATACTAATTGGAGCAATTCTACTAGCCAA AAGGCCTGCCACACTGCAATACTCGAGCACTGACAGAAGT TTGTTACTGGCAGTGT |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ta)3tgtctctgtgta(tc)3(tg)8(ta)6(tg)10ta(tg)13(ag)14 |
---|---|
PCR product (bp) | 294 |
fwd primer | emh01I23/U |
fwd primer seq. | tcgagagtcattgttgttcttcagttg |
rev primer | emh01I23/L |
rev primer seq. | ggcaggccttttggctagtagaat |
fluor. primer | emh01I23/U_PET |
dye | PET |
fluor. Primer seq. | PET-acgagagtcattgttgttcttcagttg |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 307 | 307 |
EPL-1 | 302 | 302 |
LS1151 (S.linneanum) | 289 | 289 |
LS1934 | 302 | 302 |
LS4021 (S. incanum) | 277 | 277 |
Nakate Shinkuro | 304 | 304 |
Senryo 2 | 302 | 304 |
Shironasu | 305 | 305 |
WCGR112-8 | 303 | 303 |
White Egg | 304 | 304 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_05 | 51.6 |
LWA2010 | LWA_05 | 44.824 |
LWAE2012 | E_05 | 46.084 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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