Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_04 |
Marker Type | SSR |
Map Position | 37.3 |
Annotation | |
Source Name | emg21C05 |
Source Type | genomic |
Source Sequence | TTAAGGCCTTGCTAGCAGTAAGCAATTCCAGCATAATTAA TCCCTACATTACTAATACATCCAATCCAACAACTATTCTA ATAAACCCTACCAAATGACCCCTCAATTTCAACAATTCAG ACAAGGAAGGATATATGTCTCAAACCTTGTGAAGAAAGCT CTAGCTAGACCCAACAAAGGTAGAATACGAACTTAAACGG CCATGAACATTTTATACTACAACAACAACAACAACAACAA CAACAACAACAACAACAACAACAACTACAACAACAACAAC AACATACCCAGTGAAATCCCACAAGTAGGGTCTGGGGAGG GTAGAATTTACCACTACCTAAGTAGAGAGGCTGTTTCCTG AGAACCCTTGTCTCAAAATCCATACACAGAACGGACTAGA TATGATCAAAAGTAAAAACAAGCACATGACAATACAAAAG TATAATGAGTGGAAACTAGCAAGATGGAAAAACCACCATC TGTCTTTGGGTGGTAGACTGGCTCTTATAAATTAGTCATG GATGG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (caa)15cta(caa)5 |
---|---|
PCR product (bp) | 286 |
fwd primer | emg21C05/U |
fwd primer seq. | aaccctaccaaatgacccctcaat |
rev primer | emg21C05/L |
rev primer seq. | aagggttctcaggaaacagcctct |
fluor. primer | emg21C05/U_PET |
dye | PET |
fluor. Primer seq. | PET-atccctaccaaatgacccctcaat |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 286 | 286 |
EPL-1 | 286 | 286 |
LS1151 (S.linneanum) | 283 | 286 |
LS1934 | 280 | 286 |
LS4021 (S. incanum) | 311 | 311 |
Nakate Shinkuro | 283 | 283 |
Senryo 2 | 286 | 286 |
Shironasu | 283 | 283 |
WCGR112-8 | 286 | 286 |
White Egg | 268 | 268 |
PI 286106 | 287 | 287 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_04 | 37.3 |
ALF2 | AL04 | 82.4 |
LW2010 | E_04 | 68.3 |
LWA2010 | LWA_04 | 70.57 |
LWAE2012 | E_04 | 69.757 |
LWF2_2022 | E_04 | 90.2 |
N28F2 | E_04 | 82.1 |
NAF2 | NA04 | 89.3 |
DB | Program | Definition | E-Value |
---|---|---|---|
TomatoBAC_end | BLASTN | SL_EcoRI0101F12_T7_312443 Chromat_file:SL_EcoRI_101_F12-T7 SGN_GSS_ID:329269 (vector and quality trimmed) | 2e-08 |
TomatoBAC_end | BLASTN | LE_HBa0068C06_T7_66539 Chromat_file:LE_HBa_068_C06-T7 SGN_GSS_ID:66539 (vector and quality trimmed) | 2e-08 |
TomatoBAC_end | BLASTN | LE_HBa0135I08_T7_61455 Chromat_file:LE_HBa_135_I08-T7 SGN_GSS_ID:61455 (vector and quality trimmed) | 3e-07 |
TomatoBAC_end | BLASTN | SL_EcoRI0126J05_SP6_331820 Chromat_file:SL_EcoRI_126_J05-SP6 SGN_GSS_ID:348646 (vector and quality trimmed) | 1e-06 |
TomatoBAC_end | BLASTN | SL_EcoRI0119O02_T7_326679 Chromat_file:SL_EcoRI_119_O02-T7 SGN_GSS_ID:343505 (vector and quality trimmed) | 1e-06 |
EST Name | Species | Strain |
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