Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_11 |
Marker Type | SSR |
Map Position | 50.9 |
Annotation | |
Source Name | emg11M21 |
Source Type | genomic |
Source Sequence | CCTGTCAAATTCCAAAGCTTGTATGGGCTAGTCCAGATGG GGAGGGGCAGCCCGTATTGACAGCTTTAGAATCATCATTA CTTGATTCCAAGGATCAATTCCCTTGGAATGCCATCTCTT TTAATAAAAGGAGACATCCGAATATCTCAAAGACTCATAC AAGCCTACTGCCTTCAAGACCATCTTCAAACTCTTGACTA TTAAAAAATTTGTTGTAATTATTTTGTCTTACTATGGAAA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAAAGAGAGGATTGTATTAATAAGAAAAAGCAAACA AAAAAAAATTAGAGTAGTTTAAGTTTAATTTATTATAACT ACAAAATTTCAAAGGCTTGAAGAGATTATCCTTGCAACCT AAGGGGACTGGACGTAGGACTCACATTGAATATGAATCTC TATAAATATCCGGTGTTGAACTTCCTTTTATGCTCGTTAA TTCTACAAACTATTTTTATTGCTCATAGTCGACTATCACT TAAGTTAGCTGACTAACGGTTAATATTTTAAGTAAAAAGG AAAGAAATTTCAATTCACCCCCACCCCCACCTTGCACTTT CAATTGGTATCAGAGTCTAGTCTCATTGTATTTTCTATCT AACCATAGGTGAATAAAGATCATAGGAAATCATCATCAAG CAATTGGAGCCTTGTTTCAAGATGGAACTTCTCAAACCAG ACCTCCCTACTTCAATGGGAAGAGCTTCTGCTAGCAAGGC A |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ag)23aa(ag)3 |
---|---|
PCR product (bp) | 261 |
fwd primer | emg11M21/U |
fwd primer seq. | caagcctactgccttcaagaccat |
rev primer | emg11M21/L |
rev primer seq. | gtcctacgtccagtccccttaggt |
fluor. primer | emg11M21/U_VIC |
dye | VIC |
fluor. Primer seq. | VIC-atagcctactgccttcaagaccat |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 260 | 260 |
EPL-1 | 262 | 262 |
LS1151 (S.linneanum) | 257 | 257 |
LS1934 | 267 | 267 |
LS4021 (S. incanum) | 266 | 266 |
Nakate Shinkuro | 264 | 264 |
Senryo 2 | 262 | 262 |
Shironasu | 283 | 283 |
WCGR112-8 | 258 | 258 |
White Egg | 269 | 269 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_11 | 50.9 |
EW2009 | LG01 | 51.2 |
LW2010 | E_11 | 54.5 |
LWA2010 | LWA_11 | 52.034 |
LWAE2012 | E_11 | 53.86 |
LWF2_2022 | E_11 | 70.7 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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