+Marker Data: emg11K04

Crop eggplant
Population AL2010
Linkage Group E_12
Marker Type SSR
Map Position 44.7
Annotation
Source Name emg11K04
Source Type genomic
Source Sequence NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNN NNNNNNNNNNNNNNNNNNNNCCACTTGCTAAATTGAAAAC GGGTGGACAACACCTAGTTATTTTAGTAATAATTTATCAT GACAACATTATTGGTAATCTTTCCCAGCATCTTTTACAAA CATGTATAGAACTTCAAAGTGTTTTTTTATTTCCCTACTC ATTAATGAAGGTTTTTGCAAAATATTTTCTTTGTTGTGTG GACGCCTCCACGTGTTGGACAACAACTGATTTAGGCTGCC AGATGCCCGCTTAAGATATTACTTTGTGTGTGTGTGTGAA AGTGAGAGAGAGTGTGTGTGTGTGTGTGTNNNNNCTTTGT GAAGGGCATTGAGATTTTAGTTGATCTTATTTCTTGACTT TTATCAGTATCACTTTTCAGTTTTTATATGCTCTATTCAT TGAGTGGACATAGGATGAAGACTCACCTGACAATTAGAAC TGAGACCTTTAGTAGTAATCCCTAGTCTTAGAACTACGTG CCTCCCTAGATTTTTTTAAGGGTCACCCATCAGATTAGGA CGGGCACCTTAGTCATCTTTTGGACATTAGTTTAGTGAAT TCACGTCAGACACTGCTTTTACCCTGGAAGGTACAGATCG CCCTCCTACCTGGGGTACATGCTAGACTCAATTTAGCTCA GATGGAGTTGGTCGGTTAATAGTATCTCCCACAGTTCAGT CTCACATCATTGCATTGACTTCATATACAGTTGTTTCAAT TCAGTCTTTATCAGTTGTATGTTTACTACTTGGTCATTGC AGCCTGTTTGGATGAGAACTTATTTATGTTATTTGTCTGA AAAAGAAGTGATTAAAAGCACTTTTAAATCTTATGCCCAA ACACTATAAAAATGCTTAAAGCTATTTTGACTTAAAAGCA CCTAAAATAAGCCAATCCAAATAGGCTCTTTGTCAAAATT CTGAGGGNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153

motif (tg)7aaagtg(ag)4(tg)8
PCR product (bp) 294
fwd primer emg11K04/U
fwd primer seq. gccagatgcccgcttaagatattact
rev primer emg11K04/L
rev primer seq. taaggtgcccgtcctaatctgatg
fluor. primer emg11K04/U_PET
dye PET
fluor. Primer seq. PET-accagatgcccgcttaagatattact
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq

Line allele-1 allele-2
AE-P03 340 340
EPL-1 344 344
LS1151 (S.linneanum) 346 346
LS1934 344 344
LS4021 (S. incanum) 336 336
Nakate Shinkuro 344 344
Senryo 2 344 344
Shironasu 344 344
WCGR112-8 342 342
White Egg 340 340

Population Linkage Group Position
AL2010 E_12 44.7
ALF2 AL12 53.4
LW2010 E_12 50.3
LWA2010 LWA_12 46.589
LWAE2012 E_12 47.648
LWF2_2022 E_12 55.4
NAF2 NA12 41.2

DB Program Definition E-Value
TomatoBAC_end BLASTN LE_HBa0001O03_T7_127728 Chromat_file:Le-HBa001_O03-T7 SGN_GSS_ID:135345 (vector and quality trimmed) 5e-14
TomatoBAC_end BLASTN LE_HBa0001O03_T7_677 Chromat_file:Le-HBa001_O03-T7.ab1 SGN_GSS_ID:677 (vector and quality trimmed) 5e-14
TomatoBAC_end BLASTN LE_HBa0211J17_SP6_372932 Chromat_file:LE_HBa_211_J17-SP6 SGN_GSS_ID:390143 (vector and quality trimmed) 2e-13
TomatoBAC_end BLASTN SL_EcoRI0124I04_SP6_330234 Chromat_file:SL_EcoRI_124_I04-SP6 SGN_GSS_ID:347060 (vector and quality trimmed) 7e-13
TomatoBAC_end BLASTN LE_HBa0003E11_T7_53589 Chromat_file:LE_HBa_003_E11-T7 SGN_GSS_ID:53589 (vector and quality trimmed) 7e-13

EST Name Species Strain