| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 6.6 |
| Annotation | |
| Source Name | emg11I04 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNN NNNNNNNNNNNNNNNNNNNNCCCGAATGATAAATTTTTAC TAATATAAATTACTTTTAATCGTCAAAAATTATGTTGTTT GGAATTTTTTAAAAAGTCAATGAAAGCATGTGATACACTC CAAAAGCAATGTATTTTGGAGAATTCAATACAAATACGAT AACGTTTCTGAAGACTGAGTAACACAACCTCAAATAAATT TGAAGATTTTGCAGTTTTAGTTACAACACAAAAAGTAGAA GGAAAAACAAGGGAATTGAACAAACTCCATCAACTTGTTA CTATACAAACTAATTGTGACTATTTCCTTCTTCCTATTTT TTGTGTTACGTTTAAGAGGATCAACAATATTCTCACTTAC TATTTACATAACTCGAACATTTAAACTTACTTAATACATT TTAATTGACAATCACTCTTTACTGATTTCTGTTAATATTT GATCGAGCTGTTTATGAAATTTTGTGTTTTAAGTCAATAA GCAATTCTTCATACTTGGATTGAGCCTTGAGGCTATACGT TTGGTCCATATCTAACGTGACATTCCTTCCACCAACACGA ACTACGAGTAAGTTAATGCCAGGATGCTCCCCCATATGCA TACCATAAGCAAGTGCTTCGCGATCATCATGTCCCCCAAA GAACAAGATGGTTAAACTCGAAACATCTTATTATTNNNNN TTTTTTTTTCATAATAAAAGTTGCTCAATTTCTCTAAAAT ATATTTGCATAGAAGAAAAAGAATATATTGCGTAAATATT TCTCCTATTTTCAATTTTCTCCATCATTCAGGTTTCTCTC TTCCCCTCTCTTTATAATATGTTATCGTCAAAAAATTATA CTATATATATATGTCTATCATGTGTATATATATATGTATA TATAAAGTACGTTTGTTATAGAAAAAAAAAAGTTTTCTTA GAAAAATAAGTAGATTTTTGACTTATTTATTTTTAATGTT TAGTAAGTAAAATTTTATTGTCTAATTAAGAGTATTTATA TATAATCTAATAAAATATCAATGGAGAGTGAGAGTACACG AGTGACAGGAGAAAAGATGATCAAGAGTGGAGGGCATTGA ATGATCGAGGAGGAGATAGTTAACTTAGAATGTTATTTAT GAAATTTTCTCTGTTTTCGTAAGAGAAGTAAATTTTTCTC ATTTTTTAAAGAAATTTATTTTCCTTCGTACCAAACACTT CCATAATATGTTAAACAAAAATATATTACACCTTTTGTAC CGATTAAAAAGAAAAACAATGCAACATAAATCGAGATAAA TGTCACATAAATAACTTTCAAATTTACATTATAGAGAAAA NNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)5tgtctatcatgtg(ta)5tg(ta)4 |
|---|---|
| PCR product (bp) | 293 |
| fwd primer | emg11I04/U |
| fwd primer seq. | tcattcaggtttctctcttcccctc |
| rev primer | emg11I04/L |
| rev primer seq. | tgccctccactcttgatcatcttt |
| fluor. primer | emg11I04/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-acattcaggtttctctcttcccctc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 295 | 295 |
| EPL-1 | 295 | 295 |
| LS1151 (S.linneanum) | 291 | 291 |
| LS1934 | 296 | 296 |
| LS4021 (S. incanum) | 289 | 289 |
| Nakate Shinkuro | 295 | 295 |
| Senryo 2 | 295 | 295 |
| Shironasu | 295 | 295 |
| WCGR112-8 | 280 | 280 |
| White Egg | 277 | 277 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 6.6 |
| ALF2 | AL08 | 7.5 |
| EW2009 | LG07 | 3.0 |
| LW2010 | E_08 | 2.8 |
| LWA2010 | LWA_08 | 4.956 |
| LWAE2012 | E_08 | 2.679 |
| LWF2_2022 | E_08 | 2.3 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
