| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 52.0 |
| Annotation | |
| Source Name | emg11D22 |
| Source Type | genomic |
| Source Sequence | CCTAAGATGACCCAACACGTAAGACATGCTGGGCCCATGT TTGGCATTTATGGCAATCACTAGTTACGAAAATTTCGTAT TATGCATGAGTCCAATATTTATTTATAAATTTATTTTTTA AGTAATATTAAATAAATGATATTAGATCATGTTATTAAGT GTCAATTAAATACTTAATAAATAGTATTAGCATTTTTTAT TTTTAAGTGATAATGATTAAATTACATTAAATTTTTACAC TAAAATAAATTATAACATATATATATATATGTGTGTGTGT GTGTGTGTGTGTGATCAGGTCCATTGAGATATCCATAGTT AAATTGTTTGTCATCATAGAGTATTGACATTTTACTCAAA ATAGTTATAAAACATACACAAATATTATCAATATTCAAAT AACAAAGCTATAATTAAAGGATATGAATTTACAACTAAAT AATATAATTAAAGTAGTTCCCATAAATTTGATGAAAATTA TATACTAATTAAATTCAAATAGAATAATAAAAATAATAAT TTGAAATTTTTTATAAAAATGTCCTTGGGGAATCAAACAC ATTAATAAAGACTTGTATACTTTATATTCAAACTTCCTAT TATATAATAAGATAAAAATGAGAAATACTCTATAAAATAC TAAGGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)6(tg)12 |
|---|---|
| PCR product (bp) | 289 |
| fwd primer | emg11D22/U |
| fwd primer seq. | gggcccatgtttggcatttat |
| rev primer | emg11D22/L |
| rev primer seq. | actatggatatctcaatggacctga |
| fluor. primer | emg11D22/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-aggcccatgtttggcatttat |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 291 | 291 |
| EPL-1 | 291 | 291 |
| LS1151 (S.linneanum) | 291 | 291 |
| LS1934 | 288 | 288 |
| LS4021 (S. incanum) | 299 | 299 |
| Nakate Shinkuro | 291 | 291 |
| Senryo 2 | 291 | 291 |
| Shironasu | 291 | 291 |
| WCGR112-8 | 289 | 289 |
| White Egg | 291 | 291 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 52.0 |
| EW2009 | LG06 | 74.0 |
| LWA2010 | LWA_09 | 57.095 |
| LWAE2012 | E_09 | 42.545 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0086E03_SP6_352312 Chromat_file:SL_EcoRI_086_E03-SP6 SGN_GSS_ID:369138 (vector and quality trimmed) | 1e-07 |
| TomatoBAC_end | BLASTN | LE_HBa0008A15_T7_3101 Chromat_file:LE_HBa_008_A15-T7 SGN_GSS_ID:3101 (vector and quality trimmed) | 2e-06 |
| EST Name | Species | Strain |
|---|
