| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_07 |
| Marker Type | SSR |
| Map Position | 16.6 |
| Annotation | |
| Source Name | emg11D05 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNN NNNNNNNNNNNNNNNNNNNACTTCTTTTAAATTTCTAACT CAAGTAAATAAAGTGACATGTAGGGTCTTTTGATTTAACT TTTATGCATCAAGATAAATTTATCACTCCTCATAAATAAT ATTCTCATAATAAAGTATTTAAAAGTACACGACAATAAAC TTATTTATGTAAAATATCTTACTATAAAAGATTTAGAAAA TAGGAGCAACTTACAAGAATAAAATTGTCGAAGTTCTACA TAATAAAAGACATTCCTTCAGCTAATAAAACTCTCAATAT ATATATATTCTTTTTCTTATGTTTCCCTCATCTGTCTTTC TTTCTTGTTTTCTCGTGTGAACTTAAGCAGAATGCTCTCT ATCTATATTTTCTTCTCTTACTCTAAATGCAGCAAAACAG GATATATATATATATATATATATATGTGTGTGTGTGTGTG TGTGTGTGNNNNNATATATATGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGAACAATCGTGCTCCAACAAATGGA GCATGACAGAAACTTTTTGCTCAGTGGAGCATTTGCCACA CACATATATATATATGTAAACAATCGTGCTCCAACAAATG GAGCATAACAGAAACTTTCTGCTCAGTGGAACATTTGCCA ACTTTATGCTCAGTAGAGCATTTGCCCCTTAGCAATAAAG AAACAAGATATTAATGTAGCATTAGATAGCATTAGACATT AATGAAAATATGGATAGAACAATAAGTGAATTAAAAAAAT GTAATCACCTAATCCACTAAACAATATTCTCAGATAATTT AAAAAAAACCCACAATCCCTCACTTATTAAAAAAATCTTT CTTACACTATTCCAACTTGAGTAGGCAATATTTCGGGGTT GTAACATTATCCATCACTAAAATTTATGTTCATCCAAGAA CATAACTTAAAAAAGAGTATCTAAAGTTTCGAAAAGGTAA GGGTATTTAACACGCATGTTTGATTCTATCTCCCAAGTCG CCTCTCTAATGGGACAGTTCTTTCATTGCACCTTTATGGA TGCTATCTCTTTATGTCTAAGCATGCGAACCTATCTGTCA TGACCCAACCCATGGGNNNNNNNNNNNNNNNNNNNNNNNN ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)11(tg)12nnnnna(ta)3(tg)18 |
|---|---|
| PCR product (bp) | 208 |
| fwd primer | emg11D05/U |
| fwd primer seq. | tcgtgtgaacttaagcagaatgctc |
| rev primer | emg11D05/L |
| rev primer seq. | gcaaaaagtttctgtcatgctcca |
| fluor. primer | emg11D05/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-acgtgtgaacttaagcagaatgctc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 176 | 176 |
| EPL-1 | 176 | 176 |
| LS1151 (S.linneanum) | 169 | 169 |
| LS1934 | 186 | 186 |
| LS4021 (S. incanum) | 213 | 213 |
| Nakate Shinkuro | 174 | 174 |
| Senryo 2 | 176 | 176 |
| Shironasu | 186 | 186 |
| WCGR112-8 | 182 | 182 |
| White Egg | 184 | 184 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_07 | 16.6 |
| ALF2 | AL07 | 26.3 |
| EW2009 | LG02 | 63.6 |
| LW2010 | E_07 | 37.5 |
| LWA2010 | LWA_07 | 38.94 |
| LWAE2012 | E_07 | 32.652 |
| LWF2_2022 | E_07 | 39.8 |
| NAF2 | NA07 | 44.4 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
