Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_10 |
Marker Type | SSR |
Map Position | 115.1 |
Annotation | |
Source Name | emg01H23 |
Source Type | genomic |
Source Sequence | CCCATGCAGAAGTACTCCCTTTGTAGGTCGTAAGCCCATG CTGAAGTATTAACAACTGAACATTAACATATGATAAAGAA AGTAGACATTTTCTACATTGACTGATTTTATTATATTGGT GTAATAGGCAGCTCATTAGCAGTGCTAAACAAACAGCATC TCCAGGAGTAAAAGCTGATTTCCTAAATAAGAGCTATACA TTTGCCTTCAGAAATTCCAATGATTTTCCTAAGGAACAAA CTACTCCTGACCCATAAAGGAAAAGGAGAAAGCTTCTTAT TTAAATTCTGGCAGGAGTAACATTGTCCTGCAACAAAAGC AAATCTAACAGTAACTGATATCAAGCGTTTAGAAGTTTTA ACCATTTTTAAAGAAAAGATTTTGTGTGTGTGTGTGTGTG TGTGTGTGTAGGTTCAGAGTCCAAAAATGGCATTATAGCA GGAGAAAGTAGCAGCAGAGCAAGGTGTTGAAGGGAAATTA AGATCGACCAAACCTCTCCAATAGGCTAATCCATTATTTG GCCAATTCCTTATCACCTCAGTCTTTTTTGGATCCACTTT AATCCCTCCACCCGATACTAAATTTCCTAGAACGACAACT TTCTTCAACTAAAATTCATATTTGTCAAACTTAGCAAACA ACCTTTCTTCCCTCAACTTTTGCAACACTACCCTCATATG TTTTACATGTTCCCCTTCACTCTGAGAATAAATCAAAATA TCATCAATGAAGACCACCACAAACATGTCAAGGTAGGGTT TAATGACCCTATTCGTAAGATTTATAAATATTGCTTGAGC ATTAGTTAGGCCCTACGCTTGGATCATGACACTTAGGCAC AAGACCCTAAGG |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tg)13 |
---|---|
PCR product (bp) | 292 |
fwd primer | emg01H23/U |
fwd primer seq. | tgctaaacaaacagcatctccagg |
rev primer | emg01H23/L |
rev primer seq. | aatgccatttttggactctgaacc |
fluor. primer | emg01H23/U_FAM |
dye | FAM |
fluor. Primer seq. | FAM-agctaaacaaacagcatctccagg |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 291 | 291 |
EPL-1 | 291 | 291 |
LS1151 (S.linneanum) | 302 | 302 |
LS1934 | 287 | 287 |
LS4021 (S. incanum) | 302 | 302 |
Nakate Shinkuro | 291 | 291 |
Senryo 2 | 287 | 291 |
Shironasu | 287 | 287 |
WCGR112-8 | 291 | 291 |
White Egg | 291 | 291 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_10 | 115.1 |
ALF2 | AL10 | 144.2 |
LW2010 | E_10 | 108.5 |
LWA2010 | LWA_10 | 105.014 |
LWAE2012 | E_10 | 113.969 |
LWF2_2022 | E_10 | 113.1 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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