| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 69.9 |
| Annotation | |
| Source Name | emf21N03 |
| Source Type | genomic |
| Source Sequence | CTAGGTCTGAAATGAGTTTTACAGGTTCCAGTTGTTCAAT TTTTTCTTTTCTATCCTTCCAAAGTTTTCCTTTTATTACG CTATGTATATTTTGATTGAATGTGGTCGTCACAGAAGTGA ACTTAACTTTTTGGTTAAGGGCAAGTAAGATCTTTACTTC CATTACAAACAGGATCTGGATGACAACATATGCGGGCTCA ATCAAGTCCTTGCAGTAACCATGTTCAACTGTTCTTGTAG TTGTAAAACAACTTAACTAAAGAACAACAAAACAAGCATC TAATTGCTGTAGTGGGAGTTCATGTTTATTCATATGTATA AGCAACCAAAGGCCAGAGGGGGAAAACCACAAACCCAGAG GAGCAAAGGGAAAAATACTATATACATACATACACACACA CACACACACACACACACACACACACACACATATATATATA TATATATATATATAAGAAATATGTTATTGTATATATGAAA CTACAAAGGCAGACGTAAATTGTTGGTTTGGTCCAGTAGC GTCTTTATCCAAATAGTAAATCAAACCCAATGTTATTAGC TTTTTAGGCTTAACACCAAATAGTTCCAAATTAAAAAATA AATCAGTTTATCAACTCAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3catacat(ac)19a(ta)12agaaatatgttattg(ta)3 |
|---|---|
| PCR product (bp) | 169 |
| fwd primer | emf21N03/U |
| fwd primer seq. | cccagaggagcaaagggaaaaata |
| rev primer | emf21N03/L |
| rev primer seq. | acgctactggaccaaaccaacaat |
| fluor. primer | emf21N03/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-accagaggagcaaagggaaaaata |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 176 | 176 |
| EPL-1 | 176 | 176 |
| LS1151 (S.linneanum) | 199 | 199 |
| LS1934 | 166 | 166 |
| LS4021 (S. incanum) | 181 | 181 |
| Nakate Shinkuro | 176 | 176 |
| Senryo 2 | 176 | 176 |
| Shironasu | 200 | 200 |
| WCGR112-8 | 172 | 172 |
| White Egg | 172 | 172 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 69.9 |
| EW2009 | LG06 | 57.4 |
| LW2010 | E_09 | 64.0 |
| LWA2010 | LWA_09 | 68.147 |
| LWAE2012 | E_09 | 52.236 |
| LWF2_2022 | E_09 | 77.3 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
