Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_07 |
Marker Type | SSR |
Map Position | 14.3 |
Annotation | |
Source Name | emf21M21 |
Source Type | genomic |
Source Sequence | NNCTAGTTGGTGAGTCCTCCATTCCGGAGATGTTAGTCTA TATTGCTTATGCTATGTATTGATACTCTTTTTTTATTGCT ACTTTTTTTTTATTGCTACTTTGACTATGAGGGTGAGCAC GGTTGCTTGTCTTGGACCCCGCTAAGTATCTATGTTCAGA AGTATTGTTGGACAAGTTGTGTATTATACTTGAGTTTTGA CTCATCTATGATATTTAAGTATTACTCTCTCTCTCTCATT CTCTCTCTCTCTCTCTCTCTCTCCCCTAGTCCCAATTCCC CTTGTTGATGCTTATCTCTATTTGTCATTTTTAATTGCTT CCGCGACTAAGGATGTGTAATGATATGTATGAAGNNNNNN NNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (tc)6at(tc)12 |
---|---|
PCR product (bp) | 201 |
fwd primer | emf21M21/U |
fwd primer seq. | ttgtcttggaccccgctaagtatc |
rev primer | emf21M21/L |
rev primer seq. | gtcgcggaagcaattaaaaatgac |
fluor. primer | emf21M21/U_NED |
dye | NED |
fluor. Primer seq. | NED-atgtcttggaccccgctaagtatc |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 203 | 203 |
EPL-1 | 205 | 205 |
LS1151 (S.linneanum) | 219 | 219 |
LS1934 | 205 | 205 |
LS4021 (S. incanum) | 213 | 213 |
Nakate Shinkuro | 205 | 205 |
Senryo 2 | 205 | 205 |
Shironasu | 205 | 205 |
WCGR112-8 | 203 | 203 |
White Egg | 203 | 203 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_07 | 14.3 |
EW2009 | LG02 | 66.2 |
LW2010 | E_07 | 37.0 |
LWA2010 | LWA_07 | 37.679 |
LWAE2012 | E_07 | 31.571 |
LWF2_2022 | E_07 | 40.4 |
DB | Program | Definition | E-Value |
---|
EST Name | Species | Strain |
---|