Crop | eggplant |
---|---|
Population | AL2010 |
Linkage Group | E_07 |
Marker Type | SSR |
Map Position | 16.1 |
Annotation | |
Source Name | emf21M05 |
Source Type | genomic |
Source Sequence | CTAGTTCAACACCCCCAACAGGAGTAACACCAGGTGTATA AGGATTCAGTAAAAGCACTAGCATTATAAAGTTGAACTGG TACTAGATATATAAATATACAACACTAGACCAACCCTCCC AAGACCTGGAAGTCACCTACACAGAACTACTATAGACATG ATACAACATAACACACACACACACACACACACACACACAC ACACATTAAGGAGAACAGTTTGCAATGTGGTTAAGCCAAG TGGCAAGGCTTCTGCTAGCAAGGCCTA |
Developer | NIVTS |
Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
motif | (ac)17 |
---|---|
PCR product (bp) | 138 |
fwd primer | emf21M05/U |
fwd primer seq. | ctcccaagacctggaagtcaccta |
rev primer | emf21M05/L |
rev primer seq. | agaagccttgccacttggcttaac |
fluor. primer | emf21M05/U_NED |
dye | NED |
fluor. Primer seq. | NED-atcccaagacctggaagtcaccta |
PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
polymerase | Roche Taq |
Line | allele-1 | allele-2 |
---|---|---|
AE-P03 | 134 | 134 |
EPL-1 | 140 | 140 |
LS1151 (S.linneanum) | 194 | 194 |
LS1934 | 142 | 142 |
LS4021 (S. incanum) | 188 | 188 |
Nakate Shinkuro | 150 | 150 |
Senryo 2 | 142 | 142 |
Shironasu | 142 | 142 |
WCGR112-8 | 142 | 142 |
White Egg | 142 | 142 |
Population | Linkage Group | Position |
---|---|---|
AL2010 | E_07 | 16.1 |
ALF2 | AL07 | 27.0 |
EW2009 | LG02 | 64.1 |
LWA2010 | LWA_07 | 39.185 |
LWAE2012 | E_07 | 32.875 |
NAF2 | NA07 | 44.4 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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